View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_high_19 (Length: 202)
Name: NF3601_high_19
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 39919268 - 39919104
Alignment:
| Q |
20 |
agaaaccaggtttggatttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaac |
119 |
Q |
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| T |
39919268 |
agaaaccaggtttggatttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatcttcttcacaagacaaaac |
39919169 |
T |
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| Q |
120 |
cttccaatgaggaatagcaaaacgtaacggttcacagctagaaacttcagttgccacagcactac |
184 |
Q |
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| T |
39919168 |
cttccaatgaggaatagcaaaacgtaacggttcacagctagaaacttcagttgccacagcactac |
39919104 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 101
Target Start/End: Original strand, 5544805 - 5544869
Alignment:
| Q |
37 |
ttagtccaatcaccaacagaaccatcactataatcttctcctaatctcttaatacaccacaaatc |
101 |
Q |
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| T |
5544805 |
ttagtccaatcaccgatagaaccatcactataatcatcaacaagcctcttaatacaccataaatc |
5544869 |
T |
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