View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_high_3 (Length: 536)
Name: NF3601_high_3
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_high_3 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 295 - 536
Target Start/End: Original strand, 618770 - 619010
Alignment:
| Q |
295 |
tttaaagggacatagtgaagagtgtggaattttagaggctcctataatttcacgagaagggagaacatgcgcgtttatgaatggaatggaatgacggatt |
394 |
Q |
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| T |
618770 |
tttaaagggacatagtgaagagtgtggaattttagaggctcctataatttcacgagaagggagaacatgcgcgtttatgaatggaatggaatgacggatt |
618869 |
T |
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| Q |
395 |
agtccttgatgtgggtcctacattgactctttctaaagtgaggataaggacaatcaacggtcactatgcaatatgactaatggggtctttatttttaaga |
494 |
Q |
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| T |
618870 |
agtccttg-tgtgggtcctacattgactctttctaaagtgaggataaggacaatcaacggtcactatgcaatatgactaatggggtctttatttttaaga |
618968 |
T |
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| Q |
495 |
gtaatgaatgggatataaactattgcatgtaacgtctacgtt |
536 |
Q |
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| T |
618969 |
gtaatgaatgggatataaactattgcatgtaacgtctacgtt |
619010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 619326 - 619044
Alignment:
| Q |
18 |
atgtgcgagttttagttactagactacttgaccaaaaataataatattataaagatagaatctccaaataatttatttt-cggatgaatcaaactattaa |
116 |
Q |
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| T |
619326 |
atgtgcgagttttagctcctagactacttgaccaaaaataattatattataaagatagaatctccaaataatttatttttcggatgaatcaaactattaa |
619227 |
T |
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| Q |
117 |
acaccctccaagatattctatttatttttagtnnnnnnnnnn-ccttttttatttgcagacctaatatgatgtggtggaccaaaccattggttttcttct |
215 |
Q |
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| T |
619226 |
gcaccctccaagatattctatttatttttagtaaaaaaaaaatccttttttatttgcagacctaatatgatgtggtggaccaaaccattggttttcttct |
619127 |
T |
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| Q |
216 |
atacaatcagttatatattacgtcnnnnnnngagaaaatagatatcatcatcatttcacttaaattatggttgttattttttaaag |
301 |
Q |
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| T |
619126 |
atacaatcagttatatattacgtcaaaaaaagagaaaatagat---atcatcatttcacttaaattatggttgttattttttaaag |
619044 |
T |
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