View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_high_8 (Length: 417)
Name: NF3601_high_8
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 23955123 - 23955514
Alignment:
| Q |
10 |
aagaatatcaggttcaacatctagtccagatgaaggagagattcaaggtacggatttaacattaagacaatttatagatttggatgatttaaaacccgaa |
109 |
Q |
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| T |
23955123 |
aagaacatcaggttcaacatctagtccagatgaaggagagattcaaggtacggatttaacattaagacaatttatagatttggatggtttaaaacccgaa |
23955222 |
T |
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| Q |
110 |
gaaaaacattttgttccatttttagaggaagtttgcacgtggcgtccgtctttgatacaaagtcaaatgaaaaaatctcgtttgtttcgacaatgggcgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955223 |
gaaaaacattttgttccatttttagaggaagtttgcacgtggcgtccgtctttgatacaaagtcaaatgaaaaaatctcgtttgtttcgacaatgggcgt |
23955322 |
T |
|
| Q |
210 |
ttatttcattaggaaaagttctgtattttcttaagacgaagaaagtgaaagatatgagtgaagatgacataaagaatcttaagagtttgtgggaggaact |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955323 |
ttatttcattaggaaaagttctgtattttcttaagacgaagaaagtgaaagatatgagtgaagatgacataaagaatcttaagagtttgtgggaggaact |
23955422 |
T |
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| Q |
310 |
agcaaaatcttcggaattcgacttgagttggttagagccttatgttaaatctgctttaggtgtgaaaccttatttggaaagagcaaacaaat |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23955423 |
agcaaaatcttcggaattcgacttgagttggttagagccttatgttaaatctgctttaggtgtgaaaccttatttggaaagagcaaacaaat |
23955514 |
T |
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