View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3601_low_1 (Length: 841)

Name: NF3601_low_1
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3601_low_1
NF3601_low_1
[»] chr1 (4 HSPs)
chr1 (367-571)||(40033834-40034038)
chr1 (609-811)||(40033597-40033790)
chr1 (17-110)||(40034232-40034325)
chr1 (290-370)||(40034100-40034180)
[»] chr6 (1 HSPs)
chr6 (111-292)||(14544544-14544725)
[»] chr4 (2 HSPs)
chr4 (111-292)||(508058-508239)
chr4 (204-292)||(8241313-8241401)
[»] chr7 (2 HSPs)
chr7 (111-292)||(6931994-6932175)
chr7 (121-176)||(29732506-29732561)
[»] chr5 (1 HSPs)
chr5 (114-292)||(26290671-26290849)
[»] chr3 (1 HSPs)
chr3 (111-266)||(9292837-9292991)
[»] scaffold0002 (1 HSPs)
scaffold0002 (111-249)||(169538-169676)
[»] chr2 (2 HSPs)
chr2 (46-95)||(34691511-34691559)
chr2 (46-95)||(34713923-34713971)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 367 - 571
Target Start/End: Complemental strand, 40034038 - 40033834
Alignment:
Q  367 atgacatgtataaatataataatatggtacagcataattcaaaaacataaacgaataacacactaaaaacatagaacgatgctgaaaaagaacataaatt 466  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40034038 atgacatgtataaatataataatatgttacagcataattcaaaaacataaacgattaacacactaaaaacatagaacgatgctgaaaaagaacataaatt 40033939  T
Q  467 cacaacaaataaaaactaccgattcagacatataaacaaacatccaacgaatcaaaaggaaagacataaacttaagcataaacattattatcatgatcga 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  40033938 cacaacaaataaaaactaccgattcagacatataaacaaacatccaacgaatcaaaaggaaaagcataaacttaagcataaacattattatcatgatcga 40033839  T
Q  567 atacg 571  Q
    |||||    
T  40033838 atacg 40033834  T

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Target: chr1; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 609 - 811
Target Start/End: Complemental strand, 40033790 - 40033597
Alignment:
Q  609 tatctaactatcctaaatgataagaacacatcaaatagaaatgaaattgtaccctaaattgtgcgaaagaaatttaccttgaatgaagttactcagaaac 708  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40033790 tatctaactatcctaaatgataagaacacatcaaatagaaacgaaattgtaccctaaattgtgagaaagaaatttaccttgaatgaagttactcagaaac 40033691  T
Q  709 cctagaaccggtagagaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccct 808  Q
    ||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40033690 cc---------tagagaaaatgaaatggtgagagaataaacagggttacatgatttatatggtgcagcgtcgtttttctttattttgacggaattgccct 40033600  T

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Target: chr1; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 40034325 - 40034232
Alignment:
Q  17 accttttcatcatcacccattagtccttgaacttgaaatcacaaacagaatctgtccattcaacacagaagacaagacattataactactatat 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40034325 accttttcatcatcacccattagtccttgaacttgaaatcacaaacagaatctgtccattcaacacagaaaacaagacattataactactatat 40034232  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 40034180 - 40034100
Alignment:
Q  290 agtattcattcaatagtaaaataaaatacttatatagcaacagcaaaataacattcccacacatcaaaaattgcataatga 370  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||  ||||||||||||||||||    
T  40034180 agtattcattcaatagtaaaataaaatacttatatagcaacaacacaataacattcccacaagtcaaaaattgcataatga 40034100  T

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Target: chr6 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 111 - 292
Target Start/End: Original strand, 14544544 - 14544725
Alignment:
Q  111 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14544544 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 14544643  T
Q  211 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgagatgttcatgaatagt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  14544644 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 14544725  T

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Target: chr4 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 111 - 292
Target Start/End: Original strand, 508058 - 508239
Alignment:
Q  111 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  508058 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 508157  T
Q  211 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgagatgttcatgaatagt 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  508158 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 508239  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 204 - 292
Target Start/End: Complemental strand, 8241401 - 8241313
Alignment:
Q  204 actcccattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgagatgttcatgaatagt 292  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8241401 actcctattttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 8241313  T

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Target: chr7 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 111 - 292
Target Start/End: Original strand, 6931994 - 6932175
Alignment:
Q  111 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6931994 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 6932093  T
Q  211 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgagatgttcatgaatagt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  6932094 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcacatttgctgtgatgttcatgaatagt 6932175  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 121 - 176
Target Start/End: Original strand, 29732506 - 29732561
Alignment:
Q  121 agtattacttaccaaccctattttttctgctttttcgttgggactggttcttgttt 176  Q
    ||||||||||||||| || | ||||||| |||||||||||||| ||||||||||||    
T  29732506 agtattacttaccaatccaaatttttcttctttttcgttgggaatggttcttgttt 29732561  T

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Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 114 - 292
Target Start/End: Original strand, 26290671 - 26290849
Alignment:
Q  114 taggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactcccattt 213  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26290671 taggagtagtattacttaccaactctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactcccattt 26290770  T
Q  214 tgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgagatgttcatgaatagt 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26290771 tgtagctgcatcacagctacttatttacgtgggagctattaacattttaatcatatttgctgtgatgttcatgaatagt 26290849  T

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Target: chr3 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 9292991 - 9292837
Alignment:
Q  111 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292991 gtctaggagtagtattacttaccaaccctattttttctgctttt-cgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 9292893  T
Q  211 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca 266  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9292892 ttttgtagctgcatcacagctacttatttacgtgggagctattaacattttaatca 9292837  T

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Target: scaffold0002 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 111 - 249
Target Start/End: Original strand, 169538 - 169676
Alignment:
Q  111 gtctaggagtagtattacttaccaaccctattttttctgctttttcgttgggactggttcttgtttgtatatccttattatatattttatcaaactccca 210  Q
    |||||||||||||||||||||||||||| |||| |||||| |||||| ||||| | ||||||||||||||||||||||| ||| |||||| ||| ||| |    
T  169538 gtctaggagtagtattacttaccaaccccatttattctgccttttcgctgggattagttcttgtttgtatatccttattctattttttattaaattccta 169637  T
Q  211 ttttgtagctgcatcacagctacttatttacgtgggagc 249  Q
     ||||||||||   |||| || |||||||| ||||||||    
T  169638 ctttgtagctgtcgcacaacttcttatttatgtgggagc 169676  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 34691511 - 34691559
Alignment:
Q  46 aacttgaaatcacaaacagaatctgtccattcaacacagaagacaagaca 95  Q
    ||||||||||| |||||||| |||||| ||||||||||||| ||||||||    
T  34691511 aacttgaaatctcaaacaga-tctgtcaattcaacacagaaaacaagaca 34691559  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 34713923 - 34713971
Alignment:
Q  46 aacttgaaatcacaaacagaatctgtccattcaacacagaagacaagaca 95  Q
    ||||||||||| |||||||| |||||| ||||||||||||| ||||||||    
T  34713923 aacttgaaatctcaaacaga-tctgtcaattcaacacagaaaacaagaca 34713971  T

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