View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3601_low_12 (Length: 333)
Name: NF3601_low_12
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_low_12 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 30680394 - 30680087
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30680394 |
aatatccatagttcgaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30680295 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30680294 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattgatatcatccaaaatcatcacctcttatagtttctgtggttcag |
30680195 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
310 |
Q |
| |
|
|||||| ||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30680194 |
ctgaagtatcctcttgctttcagcaaaagcagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
30680095 |
T |
|
| Q |
311 |
caacatat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
30680094 |
caacatat |
30680087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 318
Target Start/End: Complemental strand, 30716572 - 30716265
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
30716572 |
aatatccatagttcaaagcgaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatataaa |
30716473 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
30716472 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagattctgtggttcag |
30716373 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcattcca |
310 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
30716372 |
ctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgataaataaaattgtccgacacaaacatggctgcaagtcagcagcattcca |
30716273 |
T |
|
| Q |
311 |
caacatat |
318 |
Q |
| |
|
|||||||| |
|
|
| T |
30716272 |
caacatat |
30716265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 30056830 - 30057140
Alignment:
| Q |
10 |
aagaatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatat |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
30056830 |
aagaatatccatagttcgaagcgaaataagtgtcacctgttcagtttcataggagatgctctctgtaagtgatatgactaatgctaatatactaaaatat |
30056929 |
T |
|
| Q |
110 |
a--gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
207 |
Q |
| |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30056930 |
aaagagttaaaagataaaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggtt |
30057029 |
T |
|
| Q |
208 |
cagctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaataacattgtccgacacaaacatggctgcgattcagcagcatt |
307 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
30057030 |
tagctgaagcatcctcttgctttcaggaaaaacagtggacacaacacaacttgatcaataacattgttcgacacaaacatggctgcgatttagcagcatt |
30057129 |
T |
|
| Q |
308 |
ccacaacatat |
318 |
Q |
| |
|
||||||||||| |
|
|
| T |
30057130 |
ccacaacatat |
30057140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 30480489 - 30480723
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||||||| ||| |||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
30480489 |
aatatccatagttcaaagagaaataaatggctcctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatctactaaaatatatg |
30480588 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
30480589 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacatttgatttctcattcatatcatccgaaattatcacctcttatagtttctgtggttcag |
30480688 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtgg |
245 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| |
|
|
| T |
30480689 |
ctgaagcatcctcttgctttcaggaaaagcagtgg |
30480723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 165 - 318
Target Start/End: Original strand, 30746455 - 30746608
Alignment:
| Q |
165 |
ttcatatcatccaaaatcatcacctcttatagtttctgtggttcagctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatca |
264 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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|
| T |
30746455 |
ttcatatcatccaaaatcatcaccttttatagtttctgtggttcagctgaagcatcctcttgctttcaggaaaagcagtggacacaacacaacttgatca |
30746554 |
T |
|
| Q |
265 |
ataacattgtccgacacaaacatggctgcgattcagcagcattccacaacatat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30746555 |
ataacattgtccgacacaaacatggctgtgattcagcagcattccacaacatat |
30746608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 30433024 - 30433205
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||||||||| ||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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|
| T |
30433024 |
aatatccatatttcaaagagaaataaatggcacctgttcagtttcacaggagatgctctctgtaagtgatatgaataatgctaatatactaaaatatatg |
30433123 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctctt |
192 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30433124 |
gagttaaaagatgcaaaattcactttgttatcaaataaaacagttgatttcttgttcatatcatccaaaatcatcacctctt |
30433205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 30203879 - 30204043
Alignment:
| Q |
13 |
aatatccatagttcgaagc--aaaataagtgtcacctgttcagtttcacaggagatg-ctctctgtaagtgatatgactaatgctaatatacgaaaatat |
109 |
Q |
| |
|
|||||||||||||||||| ||||||| || ||||||||||||| ||||||| | | |||||||| ||||| ||| ||||||||||| | | | ||||| |
|
|
| T |
30203879 |
aatatccatagttcgaagagaaaaataaatggcacctgttcagttccacaggaaaaggctctctgttagtgaaatggctaatgctaatctgctataatat |
30203978 |
T |
|
| Q |
110 |
a--gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatc |
172 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
30203979 |
atggagttaaaagatgccaaattcactttgttatcaaataaaactgttgatttctcattcgtatc |
30204043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 30433226 - 30433294
Alignment:
| Q |
251 |
acacaacttgatcaat-aacattgtccgacacaaacatggctgcgattcagcagcattccacaacatat |
318 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
30433226 |
acacaacttgatcaattaacattgtccaacacaaacatggttgggattcagcagcattccacaacatat |
30433294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 30396996 - 30397080
Alignment:
| Q |
86 |
actaatgctaatatacgaaaatatag--agttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattca |
168 |
Q |
| |
|
|||||||||||| ||| |||||||| |||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||| |
|
|
| T |
30396996 |
actaatgctaatctactaaaatatacgtagttaaaagatggaaaattcactttgttataaaataaaacaattgatttctcattca |
30397080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 30480723 - 30480768
Alignment:
| Q |
273 |
gtccgacacaaacatggctgcgattcagcagcattccacaacatat |
318 |
Q |
| |
|
|||||||||||| |||| || ||||||||||||||||||||||||| |
|
|
| T |
30480723 |
gtccgacacaaatatggttgggattcagcagcattccacaacatat |
30480768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 20302550 - 20302259
Alignment:
| Q |
13 |
aatatccatagttcgaagcaaaataagtgtcacctgttcagtttcacaggagatgctctctgtaagtgatatgactaatgctaatatacgaaaatata-- |
110 |
Q |
| |
|
|||| ||||||||| ||| |||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
20302550 |
aatagccatagttcaaagagaaataaatggcacctgttcggttacacaggagatgctctctgtaagtgatatgactaatgctaatatactaaaatatatg |
20302451 |
T |
|
| Q |
111 |
gagttaaaagatgtaaaattcactttgttatcaaattaaacggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
210 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20302450 |
gagttaaaagatgcaaaattcactttgttatcaaataaaatggttgatttctcattcatatcatccaaaatcatcacctcttatagtttctgtggttcag |
20302351 |
T |
|
| Q |
211 |
ctgaagcatcctcttgcttttaggaaaagtagtggacacaacacaacttgatcaa-taacattgtccgacacaaacatggctgcgattcagcagcat |
306 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||| ||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
20302350 |
ctgaagcatcctcttgctttcaggaaaagcagtggaca-----caacttgatcaattaatattgtccgacacaaacatggttgggattcagcagcat |
20302259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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