View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3601_low_18 (Length: 223)

Name: NF3601_low_18
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3601_low_18
NF3601_low_18
[»] chr7 (4 HSPs)
chr7 (20-193)||(6472438-6472611)
chr7 (20-192)||(21358183-21358358)
chr7 (20-186)||(35013169-35013335)
chr7 (20-193)||(9371572-9371732)
[»] chr5 (5 HSPs)
chr5 (20-193)||(3173916-3174089)
chr5 (20-193)||(10572455-10572628)
chr5 (20-193)||(32863401-32863573)
chr5 (104-178)||(41959231-41959305)
chr5 (104-180)||(43299993-43300069)
[»] chr4 (7 HSPs)
chr4 (20-193)||(8433174-8433347)
chr4 (20-190)||(46164560-46164730)
chr4 (26-190)||(25808838-25809002)
chr4 (20-166)||(21604205-21604351)
chr4 (20-192)||(47825658-47825834)
chr4 (20-180)||(54785382-54785544)
chr4 (101-134)||(38115267-38115300)
[»] chr1 (5 HSPs)
chr1 (20-193)||(29599445-29599618)
chr1 (20-193)||(48183991-48184164)
chr1 (20-192)||(26014279-26014451)
chr1 (20-188)||(324437-324604)
chr1 (24-193)||(26354756-26354926)
[»] chr6 (2 HSPs)
chr6 (20-190)||(16497371-16497541)
chr6 (24-192)||(32396985-32397153)
[»] chr3 (1 HSPs)
chr3 (22-192)||(9456167-9456337)
[»] chr8 (8 HSPs)
chr8 (20-193)||(22432485-22432659)
chr8 (20-193)||(27576513-27576688)
chr8 (20-188)||(18068337-18068500)
chr8 (24-190)||(774879-775046)
chr8 (24-190)||(780533-780700)
chr8 (20-124)||(29182769-29182873)
chr8 (63-134)||(787851-787922)
chr8 (102-190)||(6786207-6786294)
[»] chr2 (2 HSPs)
chr2 (20-193)||(25697761-25697935)
chr2 (101-140)||(38978627-38978666)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 6472438 - 6472611
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472438 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 6472537  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472538 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaata 6472611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 21358183 - 21358358
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgc---gcatcagatgaaagagaaa 116  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||    
T  21358183 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgccgcgcatcagatgaaagagaaa 21358282  T
Q  117 ggggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaat 192  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358283 ggggaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaat 21358358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 35013169 - 35013335
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35013169 cggcccgccggcagtggtgtggtggtggatgttgttcggtggttttgctttcgctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 35013268  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgt 186  Q
    ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  35013269 gaaaaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgt 35013335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 9371732 - 9371572
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||    
T  9371732 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaa-------------cgcgcatcagatgaaagagaaaggg 9371646  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371645 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaata 9371572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 3174089 - 3173916
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3174089 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaatgcgcatcagatgaaagagaaaggg 3173990  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3173989 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaata 3173916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 10572628 - 10572455
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10572628 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 10572529  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10572528 gaagaggaaatgaaattgaattggtaatattcgtattagttaagggcattatagtaatttccagtgtataaata 10572455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 32863573 - 32863401
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  32863573 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaa-aggaacgcgcatcagatgaaagagaaaggg 32863475  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863474 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaata 32863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 41959231 - 41959305
Alignment:
Q  104 gatgaaagagaaaggggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatt 178  Q
    |||||||||||||||| ||||||||||||| | ||||| | |||| |||||||| ||||||| || |||||||||    
T  41959231 gatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcatattacttaagggtataatagtaatt 41959305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 180
Target Start/End: Complemental strand, 43300069 - 43299993
Alignment:
Q  104 gatgaaagagaaaggggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttc 180  Q
    |||||||||||||||| ||||||||||||| | ||||| | | || |||||||| | ||||| || |||||||||||    
T  43300069 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattactgaagggtataatagtaatttc 43299993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 8433174 - 8433347
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8433174 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 8433273  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8433274 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtagtttccagtgtataaata 8433347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 46164560 - 46164730
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164560 cggctcgccggcagtggtgtggtggtggatgttgttcggtagttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 46164659  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||    
T  46164660 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttcgagtgtataa 46164730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 26 - 190
Target Start/End: Original strand, 25808838 - 25809002
Alignment:
Q  26 gccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagag 125  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25808838 gccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagag 25808937  T
Q  126 gaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25808938 gaaatgaaattgaattggtaatattcatattagttaagggcattatagtaaattccagtgtataa 25809002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 21604351 - 21604205
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604351 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 21604252  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggc 166  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  21604251 gaagaggaaatgaaattgaattggtaatattcatattagttaagggc 21604205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 47825834 - 47825658
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  47825834 cggctcgccggcagtggtgtggtggtggatgttgttcggtggatttgctttggcttggagaagaaaaaagaggaacgcgcatcagatgaaagagaaagga 47825735  T
Q  120 ga----agaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaat 192  Q
    ||    ||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  47825734 gaaaggagatgaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtatataaat 47825658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 54785382 - 54785544
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaag-- 117  Q
    |||||||||||| || |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||   ||||||||||||||||      
T  54785382 cggctcgccggcggtggtgtggtggtggatgttgttcggtggatttgctttggctgggaaaagaaaaaagagaaacgcg---cagatgaaagagaaagag 54785478  T
Q  118 ---gggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttc 180  Q
       | | |||||||||||||||||||| ||||||||||||||||  ||||||||||  ||||||||    
T  54785479 aaagaggagaggaaatgaaattgaattggtaatattcatattagcgaagggcattacggtaatttc 54785544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Complemental strand, 38115300 - 38115267
Alignment:
Q  101 tcagatgaaagagaaaggggaagaggaaatgaaa 134  Q
    ||||||||||||||||||| ||||||||||||||    
T  38115300 tcagatgaaagagaaagggaaagaggaaatgaaa 38115267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 29599445 - 29599618
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599445 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 29599544  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29599545 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattataggaatttccagtgtataaata 29599618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 48184164 - 48183991
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48184164 cggcttgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 48184065  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  48184064 gaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataaata 48183991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 26014451 - 26014279
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26014451 cggctcgccagcagtggtgtggtggtggatattgttcggtggttttgctttggctgggagatgaaaaaagaggaacgcgcatcagatgaaagagaaaggg 26014352  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaat 192  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014351 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaat 26014279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 324604 - 324437
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  324604 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 324505  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtat 188  Q
    ||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  324504 gaagaagaaatgaaattgaattggt-atattcatattagttaagggcattatagtaatttccagtgtat 324437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 26354926 - 26354756
Alignment:
Q  24 tcgccggcagtagtgtggtggtggatgttgttcggt-ggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaa 122  Q
    |||||||| || ||| |||||||||| ||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26354926 tcgccggcggtggtgcggtggtggatattgttcggtcggatttgctttggctgggagaagaaaaaagacgaacgcgcatcagatgaaagagaaaggggaa 26354827  T
Q  123 gaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||||||||||||    
T  26354826 gaggaaatgaaattgaattggtaatattcatattaataaagggcattgtagtaatttccagtgtataaata 26354756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 8e-85; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 16497371 - 16497541
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16497371 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 16497470  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  16497471 gaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaattttcagtgtataa 16497541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 32397153 - 32396985
Alignment:
Q  24 tcgccggcagtagtgtggtggtggatgttgttcggt-ggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaa 122  Q
    |||||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  32397153 tcgccggcggtggtgtggtggtggatgttgttcggtcggatttgctttggctgggagaagaaaaaagagtaacgcgcatcagatgaaagagaa-ggggaa 32397055  T
Q  123 gaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaat 192  Q
    ||||||||||||||||||| |||| |||||||||| | ||||||||| ||||||||||| ||||||||||    
T  32397054 gaggaaatgaaattgaattggtaacattcatattaataaagggcattgtagtaatttcctgtgtataaat 32396985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 9456337 - 9456167
Alignment:
Q  22 gctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaagggga 121  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9456337 gctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaagggga 9456238  T
Q  122 agaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaat 192  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9456237 agaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataaat 9456167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 22432485 - 22432659
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatg-aaagagaaagg 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22432485 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaagg 22432584  T
Q  119 ggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22432585 ggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattaaagtaatttccagtgtataaata 22432659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 27576688 - 27576513
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgc--atcagatgaaagagaaag 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  27576688 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcgcatcagatgaaagagaaag 27576589  T
Q  118 gggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27576588 gggaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtataaata 27576513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 18068500 - 18068337
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||    
T  18068500 cggctcgccggcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgc-----agatgaaagagaaaggg 18068406  T
Q  120 gaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtat 188  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  18068405 gaagaggaaatgaaattgaattggtaatattcatattaattaagggcattatagtaatttccagtgtat 18068337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 774879 - 775046
Alignment:
Q  24 tcgccggcagtagtgtggtggtggatgttgttcggt-ggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaa 122  Q
    |||||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  774879 tcgccggcggtggtgtggtggtggatgttgttcggtcggatttgctttggctgggagaagaaaaaagaggaacgcgcatcagattgaagggaaaggggaa 774978  T
Q  123 gaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    ||||||||||||||||||| |||||||| |||||| | ||||| |||  |||||||||| ||||||||    
T  774979 gaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 775046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 24 - 190
Target Start/End: Original strand, 780533 - 780700
Alignment:
Q  24 tcgccggcagtagtgtggtggtggatgttgttcggt-ggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaa 122  Q
    |||||||| || |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||    
T  780533 tcgccggcggtggtgtggtggtggatgttgttcggtcggatttgctttggctgggagaagaaaaaagaggaacgcgcatcagattgaagggaaaggggaa 780632  T
Q  123 gaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    ||||||||||||||||||| |||||||| |||||| | ||||| |||  |||||||||| ||||||||    
T  780633 gaggaaatgaaattgaattggtaatattgatattaataaagggtattgaagtaatttcctgtgtataa 780700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 29182769 - 29182873
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 119  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182769 cggctcgccagcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggg 29182868  T
Q  120 gaaga 124  Q
    |||||    
T  29182869 gaaga 29182873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 63 - 134
Target Start/End: Original strand, 787851 - 787922
Alignment:
Q  63 tttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaa 134  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  787851 tttgctttggctgggagaagaaaaaggaggaacgcgcatcagatgaaagtgaaaggggaagaggaaatgaaa 787922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 190
Target Start/End: Complemental strand, 6786294 - 6786207
Alignment:
Q  102 cagatgaaagagaaaggggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataa 190  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||  ||||| |||| | |||||||||  |||||||    
T  6786294 cagatgaaagagaaaggggaagagaaaatgaaattgaattggtaatattcatatta-ataaggtcattgtcgtaatttcctatgtataa 6786207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 25697761 - 25697935
Alignment:
Q  20 cggctcgccggcagtagtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatg-aaagagaaagg 118  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  25697761 cggctcgccagcagtggtgtggtggtggatgttgttcggtggttttgctttggctgggagaagaaaaaagaggaacgcgcatcagatgaaaagagaaagg 25697860  T
Q  119 ggaagaggaaatgaaattgaattagtaatattcatattagttaagggcattatagtaatttccagtgtataaata 193  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25697861 ggaagaggaaatgaaattgaattggtaatattcatattagttaagggcattatagtaatttccagtgtataaata 25697935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 140
Target Start/End: Original strand, 38978627 - 38978666
Alignment:
Q  101 tcagatgaaagagaaaggggaagaggaaatgaaattgaat 140  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  38978627 tcagatgaaagagaaacgggaagaggaaatgaaactgaat 38978666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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