View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_low_2 (Length: 588)
Name: NF3601_low_2
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 21 - 568
Target Start/End: Complemental strand, 7949804 - 7949248
Alignment:
| Q |
21 |
aacatcggtattgttaactctttacatgctgaattaatgggtattattatggctgttgaaattgcttttgataaaaactggcatcacctttggatagaga |
120 |
Q |
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| T |
7949804 |
aacatcggtattgctaactctttacatgctgaattaataggtattattatggctgttgaaattgtttttgataaaaaatggcatcacctttggatagaga |
7949705 |
T |
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| Q |
121 |
ctgactccaagatagctaccttggccatcaagtcaccctctatagttccttggaaattaaagaatagatggaacaactgtgttggaaagcttcaatctat |
220 |
Q |
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| T |
7949704 |
ctgactccaagatagctacgttggccatcaagtcaccctctatagttccttggaaattaaagaatagatggaacaactgtgttggaaagcttcaatctat |
7949605 |
T |
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| Q |
221 |
gcaattcatcctgtctcatatttacagagaaggaaatcactgtgctgacaaacttgcaaacttaggcttatctattgttgatttcacttggtggtccttt |
320 |
Q |
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| T |
7949604 |
gcaattcatcttgtctcatatttacagagaagaaaatcatcgtgctgacaaacttgcaaacttaggcttatctattgctgatttcactt-gtggtccttt |
7949506 |
T |
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| Q |
321 |
ccttcaattgtaattagaggggacctaggtaggaacaagctaggtcttcccaactttcgattttgttaatgttcctttgatggtttggttttgcc-ccct |
419 |
Q |
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| T |
7949505 |
cctccaattataattagaggggacctaggtaggaataagctaggtcttcccaactttcgattttgttaatgttcctttgagggtttggttttgccaccct |
7949406 |
T |
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| Q |
420 |
ctcttttgtgttacactttttcatttatatattatagatgtcgcct-taggctcgtcaattat--------nnnnnnnnnnnttattttacaaaataaag |
510 |
Q |
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| T |
7949405 |
ctcttttgtattacaatttttcatttatatattatagatgtcgcctcaaggctcatcagttataaaaataaaataaaataaattattatacaaaataaag |
7949306 |
T |
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| Q |
511 |
tgacaaccatgccaagacacttacaagttccaacccccgcatttgaaaccgtctctcc |
568 |
Q |
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| T |
7949305 |
tgacaaccatgccaagacacttacaagttccaacccccacatttgaagccgtctctcc |
7949248 |
T |
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