View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_low_6 (Length: 499)
Name: NF3601_low_6
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 38026512 - 38026042
Alignment:
| Q |
17 |
actctttcacatcaaccaagtttttcccttccaacaaggttagttagttgttatttgttcttgtcttgttgaatttgcttcatgtgtttctgttttgtaa |
116 |
Q |
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| T |
38026512 |
actctttcacatcaaccaagtttttcccttccaacaaggttagttagttgttatttgttcttgtcttgttgaatttgcttcatgtgtttctgttttgtaa |
38026413 |
T |
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| Q |
117 |
aaggaaatagaaatacaattgtttgatgattgtaataatggatttgtttctgacttgtttggtgtcatcattgtttatagaatcaactgacagtactagt |
216 |
Q |
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| T |
38026412 |
aaggaaagaga--tacaattgtttgatgattgtaatgatggatttgtttctgacttgtttggtgtcatcattgtttatagaatcaactgacagtactaat |
38026315 |
T |
|
| Q |
217 |
caannnnnnnctgaaagttatgattattaatgattacaaccaatttttatactgtcatctttcacttgatgtgtgagttttgtttattttcttctatgat |
316 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38026314 |
caatttttttctgaaagttatgattattaatgattacaaccaatttttatactgtcatctttcacttgatgtgtgagttttgtttattttcttctatgat |
38026215 |
T |
|
| Q |
317 |
tgggtcataactcaaattataactaattaaaaccttacataattgttagtattatga-tgagagtgctgattgaacccttaacatgttttatgaggagag |
415 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
38026214 |
tgggtcacaactcaaattataactaattaaaaccttacataattgttagtattatgattgagagtgctgattgaacccttaacatgttttatgaggagag |
38026115 |
T |
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| Q |
416 |
ttacaattacaaagattgacattcaagtaaattagtaatagacttcaaaagttctgcagtatcacatatgctc |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38026114 |
ttacaattacaaagattgacattcaagtaaattagtaatagacttcaaaagttctgcagtatcacatatgctc |
38026042 |
T |
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