View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3601_low_9 (Length: 402)
Name: NF3601_low_9
Description: NF3601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3601_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 4 - 386
Target Start/End: Complemental strand, 30781562 - 30781183
Alignment:
| Q |
4 |
atgaagcaaagatttcattactctgaagttgttcttacatcattgctatagatagaagtcattacagttaagaccctaactaatgactaattgtcatata |
103 |
Q |
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| T |
30781562 |
atgaagcaaagatttcattactctgaagtt---cttacatcattgctgtagatagaagtcattacagttaagaccctaactaatgactaattgtcatata |
30781466 |
T |
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| Q |
104 |
actgaataaccgtttcaattagtgcaaggcactggtgctcttcataacatactttgatatcccctctcagagtcaaggtggttgcagaaaggtaaacaca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781465 |
actgaataaccgtttcaattagtgcaaggcactggtgctcttcataacatactttgatatcccctctcagagtcaaggtggttgcagaaaggtaaacaca |
30781366 |
T |
|
| Q |
204 |
ttgagtttggtgcgaagctctttaaatcgagttgatggtggtgacgtgtgaatgaattcggatgttggtcaacgacatacacatgaaggacaactacaga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781365 |
ttgagtttggtgcgaagctctttaaatcgagttgatggtggtgacgtgtgaatgaattcggatgttggtcaacgacatacacatgaaggacaactacaga |
30781266 |
T |
|
| Q |
304 |
tttagacaatccctatttctagacaaaatgaatgtccaattctatgtgctttgtacaagcatgcaaaactggatcataagaaa |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30781265 |
tttagacaatccctatttctagacaaaatgaatgtccaattctatgtgctttgtacaagcatgcaaaactggatcataagaaa |
30781183 |
T |
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