View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3602_low_1 (Length: 510)
Name: NF3602_low_1
Description: NF3602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3602_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 370; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 492
Target Start/End: Complemental strand, 40030370 - 40029906
Alignment:
| Q |
16 |
atctatatgagttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactc |
115 |
Q |
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|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40030370 |
atctatatcagttgcaccatcatttaagtgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactc |
40030271 |
T |
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| Q |
116 |
ttttgatcctacacacattcaaaacttaaggaattcaggttgattcagtaacacaaacataatcattaacagaaaacacatcttagaaacaaatatgtac |
215 |
Q |
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| T |
40030270 |
ttttgatcctacacacattcaaaacttaaggaattcaggttgattcagtaacacaaacataa-------------acacatcttagaaacaaatatgtat |
40030184 |
T |
|
| Q |
216 |
ctagtacctaccaaattatccataa--------ggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtc |
307 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40030183 |
cta-------ccaaattatccataatcttctaaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtc |
40030091 |
T |
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| Q |
308 |
cattatacgtagatgaagttgaagatattggagctccaagtgtaattacgctattggtatttggaacaaaaccgcacccaagattgtagcatccagtttg |
407 |
Q |
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| T |
40030090 |
cattatacgtagatgaagttgaagaaattggagctccaagtgtaattacgctattggtatttggaacaaaaccgcacccaagattgtagcatccagtttg |
40029991 |
T |
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| Q |
408 |
atatccatccttctgcaattattactattattttcttattaatgtgtatgttagaaacaaatataaattaccttcacgtcagaaa |
492 |
Q |
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| T |
40029990 |
atatccatccttctgcaattattactattattttcttattaatgtgtatgttagaaacaaatataaattaccttcacgtcagaaa |
40029906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 30925633 - 30925738
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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|||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| | ||||||||| |
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| T |
30925633 |
agttgcactatcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccagttttttgatcc |
30925732 |
T |
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| Q |
125 |
tacaca |
130 |
Q |
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| |||| |
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| T |
30925733 |
tgcaca |
30925738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 30916500 - 30916605
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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|||||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| | ||| |||| |
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| T |
30916500 |
agttgcactatcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaattcccattttttctatcc |
30916599 |
T |
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| Q |
125 |
tacaca |
130 |
Q |
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|||||| |
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| T |
30916600 |
tacaca |
30916605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 25 - 112
Target Start/End: Original strand, 30905797 - 30905884
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattccca |
112 |
Q |
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|||||||| ||| |||||| |||||||||||||||||||||||||||||||| ||||||||| || |||||||| |||||||||| |
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| T |
30905797 |
agttgcactatcctttaaacttgtgaacaaagaggatggccaatatccaattatgtttccagatccaaattcaagccaccaattccca |
30905884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 30927349 - 30927416
Alignment:
| Q |
252 |
taatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
320 |
Q |
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| T |
30927349 |
taatctgagtagaaaatt-accttatagattaataaagtaatttcaatttgccgtccattatacgtaga |
30927416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 30908018 - 30908085
Alignment:
| Q |
252 |
taatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
320 |
Q |
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||||||| |||||||||| |||||||||||| |||| ||||| || |||| |||||||||||||||| |
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| T |
30908018 |
taatctgagtagaaaatt-accttatagattaataaagtaatagcacgttgccgtccattatacgtaga |
30908085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 129
Target Start/End: Original strand, 29211246 - 29211350
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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|||||||| || ||||| |||||||| | |||||||||||||||||||||| ||||||||| ||||||||||| |||||||||| |||| ||||| |
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| T |
29211246 |
agttgcactgtcctttaagtgtgtgaatagggaggatggccaatatccaattaagtttccagatccatattcaagccaccaattcccatgctttggatcc |
29211345 |
T |
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| Q |
125 |
tacac |
129 |
Q |
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||||| |
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| T |
29211346 |
tacac |
29211350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 29312622 - 29312538
Alignment:
| Q |
46 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
130 |
Q |
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||||||||| | || ||||||||| |||| | |||||||||| ||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
29312622 |
tgtgaacaaggtggctggccaatagccaagaaaatttccagatccatattcaagccaccaattcccactatttggatcctacaca |
29312538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 25 - 130
Target Start/End: Complemental strand, 29255424 - 29255319
Alignment:
| Q |
25 |
agttgcaccatcatttaaatgtgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcc |
124 |
Q |
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||||||| ||| ||||| | ||||||||||||||||||||| |||||||| |||||| | ||||||||||| |||||||||| || || ||||| |
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| T |
29255424 |
agttgcattatcttttaagtttgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaattcccattccttggatcc |
29255325 |
T |
|
| Q |
125 |
tacaca |
130 |
Q |
| |
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|||||| |
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|
| T |
29255324 |
tacaca |
29255319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 29255058 - 29254977
Alignment:
| Q |
238 |
taaggtcgattcagtaatctgtgtagaaaatttaccttatagattgataaggtaatttcaacttgctgtccattatacgtaga |
320 |
Q |
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||||||| ||| |||||||| |||||||||| ||||||||||| |||||||||||||| |||| ||||||||| ||||| |
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| T |
29255058 |
taaggtctatttggtaatctgagtagaaaatt-accttatagatgaataaggtaatttcatattgccctccattatatgtaga |
29254977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 29248776 - 29248692
Alignment:
| Q |
46 |
tgtgaacaaagaggatggccaatatccaattacatttccagattcatattcaagctgccaattcccactcttttgatcctacaca |
130 |
Q |
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||||||||||||||||||||| |||||||| |||||| | ||||||||||| |||| ||||| || || ||||||||||| |
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| T |
29248776 |
tgtgaacaaagaggatggccagtatccaatagggtttccaagtccatattcaagccaccaactcccattcgttggatcctacaca |
29248692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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