View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3602_low_2 (Length: 364)

Name: NF3602_low_2
Description: NF3602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3602_low_2
NF3602_low_2
[»] chr3 (3 HSPs)
chr3 (8-364)||(46240164-46240520)
chr3 (147-361)||(23541561-23541775)
chr3 (146-319)||(30038134-30038307)
[»] chr7 (3 HSPs)
chr7 (116-364)||(3437067-3437315)
chr7 (243-361)||(14798952-14799070)
chr7 (243-361)||(15245944-15246062)
[»] chr5 (1 HSPs)
chr5 (146-322)||(29878233-29878409)
[»] chr8 (1 HSPs)
chr8 (146-304)||(3921199-3921357)
[»] chr4 (3 HSPs)
chr4 (146-322)||(6869027-6869201)
chr4 (146-301)||(4497222-4497377)
chr4 (255-358)||(11318291-11318394)
[»] scaffold0300 (1 HSPs)
scaffold0300 (146-301)||(18134-18289)
[»] chr6 (1 HSPs)
chr6 (146-301)||(24676042-24676197)
[»] chr1 (1 HSPs)
chr1 (146-249)||(36915336-36915439)
[»] scaffold0140 (1 HSPs)
scaffold0140 (267-364)||(40053-40150)
[»] scaffold0121 (1 HSPs)
scaffold0121 (255-358)||(43504-43607)
[»] chr2 (1 HSPs)
chr2 (255-358)||(18131561-18131664)


Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 46240520 - 46240164
Alignment:
Q  8 gcagaacctgtgctcaacagtctcaaacatctcttcaaacacactcattagtccctgaaatattcaacaacaataatgttacaatattaatctatgatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46240520 gcagaacctgtgctcaacagtctcaaacatctcttcaaacacactcattagtccctgaaatattcaacaccaataatgttacaatattaatctatgatct 46240421  T
Q  108 atatattaattaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagca 207  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240420 atatattaattaaatacatgaaatagactgacaacatttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagca 46240321  T
Q  208 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46240320 actccatgaaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgag 46240221  T
Q  308 tagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcct 364  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46240220 cagttgacccccatactttgtctttagatgacaaccatcaaccccaataaatggcct 46240164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 147 - 361
Target Start/End: Complemental strand, 23541775 - 23541561
Alignment:
Q  147 accttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagttt 246  Q
    |||||||| |||||||||||||| ||||||||  ||||  | |||||||||||||  |  | |||||||||||| ||||||||| |||| ||||  ||||    
T  23541775 accttctgttgatctgatatgaagacatatctcctatcccttccaatgtcatccattaaaagctccatgaaccatttccagctttccctacactttgttt 23541676  T
Q  247 caacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatc 346  Q
    | || || |||||||| |  ||||| || |||||||||||||| ||||||||| | || || ||||||||||||||||||||||||| |||||| |||||    
T  23541675 ctactattccaaatgccaatggaaaatattggtcatttgggtccctaccaacaactattagaagttgacccccatactttgtctttaaatgacatccatc 23541576  T
Q  347 aaccccaataaatgg 361  Q
     ||||||| ||||||    
T  23541575 taccccaacaaatgg 23541561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 319
Target Start/End: Original strand, 30038134 - 30038307
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| |||||||| | ||||||| |||||  || || |||||||||||    
T  30038134 taccttttgttgatctgatatgaacacatatctcttatcttcacctatatcttccatcagcaactgcgtgaaccatttccaagtttccttgcactcagtt 30038233  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgaccccc 319  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  |||||||||||    
T  30038234 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgaccccc 30038307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 116 - 364
Target Start/End: Original strand, 3437067 - 3437315
Alignment:
Q  116 attaaatacatgaaatagactgacatcacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg 215  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3437067 attaaatacatgaaatagactgacaacacttaccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatg 3437166  T
Q  216 aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgac 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3437167 aaccacttccagcttgccctgcactcagtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagcagttgac 3437266  T
Q  316 ccccatactttgtctttagatgacagccatcaaccccaataaatggcct 364  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||    
T  3437267 caccatactttgtctttagatgacagccatcaaccccaataaatggcct 3437315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 361
Target Start/End: Original strand, 14798952 - 14799070
Alignment:
Q  243 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 342  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  14798952 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 14799051  T
Q  343 catcaaccccaataaatgg 361  Q
    ||||||| |||||||||||    
T  14799052 catcaacaccaataaatgg 14799070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 361
Target Start/End: Original strand, 15245944 - 15246062
Alignment:
Q  243 gtttcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagc 342  Q
    ||||||||||  ||||| || | ||||||||| || |||||||| ||||| || ||||| |  |  | |||||| ||||| |||||||| || ||||| |    
T  15245944 gtttcaacaacaccaaaagctaaaggaaagtattgatcatttggatctcttcctacagccaccaacaattgacctccatattttgtcttcaggtgacacc 15246043  T
Q  343 catcaaccccaataaatgg 361  Q
    ||||||| |||||||||||    
T  15246044 catcaacaccaataaatgg 15246062  T

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Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 322
Target Start/End: Complemental strand, 29878409 - 29878233
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  29878409 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 29878310  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 322  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  29878309 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaatcaacagttgccccccata 29878233  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 146 - 304
Target Start/End: Original strand, 3921199 - 3921357
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || |||| ||||||||  |||||||| ||||| ||| || |||||||||||    
T  3921199 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccatcagcaactgtatgaaccatttccaactttccttgcactcagtt 3921298  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaat 304  Q
    ||||| |  ||||| || || ||||| |||||||||||||||||||| || ||||||||    
T  3921299 tcaactaccccaaaagctagtggaaaatactggtcatttgggtctcttcctacagcaat 3921357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 322
Target Start/End: Complemental strand, 6869201 - 6869027
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    |||||| || |||||||||||||| |||| ||||  |||||  || || || |||| |||||||| ||||||||| ||||| ||| || |||||||||||    
T  6869201 taccttttgttgatctgatatgaacacatctctt--atcttgacctatatcttccatcagcaactgcatgaaccatttccaactttccttgcactcagtt 6869104  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccata 322  Q
    ||||| |  ||||| || || |||||||||||||||||||||||||| || |||||||| |  ||||| ||||||||    
T  6869103 tcaactaccccaaaagctagtggaaagtactggtcatttgggtctctccctacagcaatcaacagttggcccccata 6869027  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 146 - 301
Target Start/End: Original strand, 4497222 - 4497377
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    ||||||||| |||||||||||||| |||||||||||||| || || ||||||| || || || |||||| ||||| |||||||||||| | |  |||  |    
T  4497222 taccttctgttgatctgatatgaagacatatcttttatcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttcaact 4497321  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 301  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  4497322 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 4497377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 358
Target Start/End: Original strand, 11318291 - 11318394
Alignment:
Q  255 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 354  Q
    |||||||| | |||||| || || ||||||||||||||  |||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  11318291 ccaaatgctaaaggaaaatattgatcatttgggtctcttgcaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 11318390  T
Q  355 taaa 358  Q
    ||||    
T  11318391 taaa 11318394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 301
Target Start/End: Complemental strand, 18289 - 18134
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  18289 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 18190  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 301  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  18189 tcaacaacaccaaaggccaggggaaaatactggtcattggggtcccttccaacagc 18134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 301
Target Start/End: Original strand, 24676042 - 24676197
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    ||||||||| |||||||||||||| ||||||||||| || || || ||||||| || || || |||||| ||||| |||||||||||| | |  ||   |    
T  24676042 taccttctgttgatctgatatgaagacatatcttttgtcatttcctatgtcattcatcaacagctccataaaccatttccagcttgccttactttctact 24676141  T
Q  246 tcaacaatgccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagc 301  Q
    |||||||  ||||| || || ||||| ||||||||||| ||||| || ||||||||    
T  24676142 tcaacaacaccaaaggccagtggaaaatactggtcattggggtcccttccaacagc 24676197  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 249
Target Start/End: Complemental strand, 36915439 - 36915336
Alignment:
Q  146 taccttctgctgatctgatatgaatacatatcttttatctttcccaatgtcatccaacagcaactccatgaaccacttccagcttgccctgcactcagtt 245  Q
    |||||| || |||||||||||||| |||||||| |||||||  || || || ||||  ||||||| ||||||||| ||||| ||| || |||||||||||    
T  36915439 taccttttgttgatctgatatgaacacatatctcttatcttgacctatatcttccattagcaactgcatgaaccatttccaactttccttgcactcagtt 36915340  T
Q  246 tcaa 249  Q
    ||||    
T  36915339 tcaa 36915336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 364
Target Start/End: Original strand, 40053 - 40150
Alignment:
Q  267 ggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaataaatggcct 364  Q
    ||||| ||||||||||||||||||||||||||| |||| |  ||   ||| |||||||| ||||| |||||||| |||||||| || ||||| |||||    
T  40053 ggaaaatactggtcatttgggtctctaccaacaacaattaaaagagtacctccatacttggtcttaagatgacacccatcaactcctataaagggcct 40150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 358
Target Start/End: Complemental strand, 43607 - 43504
Alignment:
Q  255 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 354  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  43607 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 43508  T
Q  355 taaa 358  Q
    ||||    
T  43507 taaa 43504  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 358
Target Start/End: Original strand, 18131561 - 18131664
Alignment:
Q  255 ccaaatgcaagaggaaagtactggtcatttgggtctctaccaacagcaatgagtagttgacccccatactttgtctttagatgacagccatcaaccccaa 354  Q
    |||||||| | |||||| || || ||||||||| |||| ||||| ||||| || ||||| || |||||  | |||||||||||||| |||||||| || |    
T  18131561 ccaaatgctaaaggaaaatattgatcatttgggcctcttccaactgcaataagaagttgtcctccatatctagtctttagatgacaaccatcaacaccga 18131660  T
Q  355 taaa 358  Q
    ||||    
T  18131661 taaa 18131664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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