View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3602_low_4 (Length: 251)
Name: NF3602_low_4
Description: NF3602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3602_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 3437301 - 3437537
Alignment:
| Q |
1 |
cccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437301 |
cccaataaatggcctacatccatttgtaaacccttttttgcatccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggccta |
3437400 |
T |
|
| Q |
101 |
tcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
200 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437401 |
tcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
3437500 |
T |
|
| Q |
201 |
ttttctgagctatctgttttgctttccacgccctacc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
3437501 |
ttttctgagctatctgttttgctttccacgccctacc |
3437537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 46240178 - 46239938
Alignment:
| Q |
1 |
cccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240178 |
cccaataaatggcctacatccatttgtaaacccttttttgcaaccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggccta |
46240079 |
T |
|
| Q |
101 |
tcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
200 |
Q |
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|||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240078 |
tcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
46239979 |
T |
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| Q |
201 |
ttttctgagctatctgttttgctttccacgccctacctttg |
241 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46239978 |
ttttctgagctatctgtttagctttccacgccctacctttg |
46239938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 23541572 - 23541336
Alignment:
| Q |
1 |
cccaataaatggcctacatccatttgtaaacccttttttgcagccatcaaaacaaaagtaaaaagatccaaacctgggttgtaatcctggatctggccta |
100 |
Q |
| |
|
||||| |||||| ||||| ||||| | || ||||| || |||||||||||||||||||| ||||| |||||||||||||| | | ||| ||| ||| |
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| T |
23541572 |
cccaacaaatggtctacacccattgatgaaacctttcttacagccatcaaaacaaaagtagaaagaaccaaacctgggttggattgatggggttggtcta |
23541473 |
T |
|
| Q |
101 |
tcaacagtgatactcaccctgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaa |
200 |
Q |
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|| ||| | || |||| | ||||||| | ||| ||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| ||||||| |
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| T |
23541472 |
tccacatttatcttcacattatttccagcattcacccttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaa |
23541373 |
T |
|
| Q |
201 |
ttttctgagctatctgttttgctttccacgccctacc |
237 |
Q |
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| ||||||| ||||||||||| ||||| |||||||| |
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| T |
23541372 |
tactctgagcaatctgttttgccttccaagccctacc |
23541336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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