View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3603_high_1 (Length: 250)
Name: NF3603_high_1
Description: NF3603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3603_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 38803467 - 38803708
Alignment:
| Q |
1 |
tgtatcatgtataggtgaatatacatcttgacgattattcgttggtgtgctgggagtatcatcctttgtatcatcatcatttaagatcctgcatacaacg |
100 |
Q |
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| T |
38803467 |
tgtatcatgtataggcgaatatacatcttgacgattatttgttggtgtgctgggagtatcatcctttgtatcatcatcatttaagatcctgcatacaacg |
38803566 |
T |
|
| Q |
101 |
attttcatcagaaaaatctgtcctttaactcaacaactccatctgctttatttaactatttcatgaccattaacagatacaacaataaacaaaaaccact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38803567 |
attttcatcagaaaaatctgtcctttaactcaacaactccgtctgctttatttaactatttcatgaccattaacagatacaacaataaataaaaaccact |
38803666 |
T |
|
| Q |
201 |
gtacctagt--agtctatcctaatatgcatcaacaacctatg |
240 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||| |
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| T |
38803667 |
gtacgtagtagagtctatcctaatatgcatcaacaacctatg |
38803708 |
T |
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