View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3603_low_4 (Length: 206)
Name: NF3603_low_4
Description: NF3603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3603_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 22719462 - 22719641
Alignment:
| Q |
11 |
tcgaagaatatgggaataactttagtgttaaagggttttagcaaaggataataatatgcatatggtggcttgaaaaggctttatgtaccaataaaaaa-c |
109 |
Q |
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| T |
22719462 |
tcgaaaaaaatgggaataactttagtgttaaagggctttagcaaaggataataatatgcatatggtggcttgaaaaggctttatgtaccagtaaaaaaac |
22719561 |
T |
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| Q |
110 |
atctcaatgtgtgtaaatgtaaagacta-tcggctatagagaatgaatgcaattcttgaaactgaacacatggggggatg |
188 |
Q |
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| T |
22719562 |
acattaatatgttcaaatgtaaagaccaatcagctatggagaatgaatgcaattcttgaaactaaacacatggagggatg |
22719641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 181
Target Start/End: Complemental strand, 23869461 - 23869292
Alignment:
| Q |
11 |
tcgaagaatatgggaataactttagtgttaaagggttttagcaaaggataataatatgcatatggtggcttgaaaaggctttatgtaccaataaaaaa-c |
109 |
Q |
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| T |
23869461 |
tcgaaaaaaatgggaataact--agtgttaaagggctttagcaaaggataataa-atgcatatggtggcttgaaaaggatttatgtaccagtaaaaaaac |
23869365 |
T |
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| Q |
110 |
atctcaatgtgtgtaaatgtaaagacta-tcggctatagagaatgaatgcaattcttgaaactgaacacatgg |
181 |
Q |
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| T |
23869364 |
acattaatatgtttaaatgtatagaccaatcagctatagagaatgaatgcaattcttgaaactgaacacatgg |
23869292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 181
Target Start/End: Original strand, 22709798 - 22709830
Alignment:
| Q |
149 |
gaatgaatgcaattcttgaaactgaacacatgg |
181 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
22709798 |
gaatgaatgcaattcttgaaactgaacacatgg |
22709830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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