View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_1 (Length: 902)
Name: NF3604_high_1
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 28 - 515
Target Start/End: Complemental strand, 21567364 - 21566872
Alignment:
| Q |
28 |
tcaacaccattttgaattctatgtagtctgataaccgaaagaactattaagaaacttacaagaccaacattgtgctcatcacactagcagaaatcatgac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21567364 |
tcaacaccattttgaattctatgtagtctgataaccgaaagaactattaagaaacttacaagaccaacattgtgctcatcacactagcagaaatcacaac |
21567265 |
T |
|
| Q |
128 |
tctatactgggatttcactcctctgaagtgagtagttagtaaagtgagaaaatcaagaattcacattttaacaacccgtgatttgttacgtgtgtagata |
227 |
Q |
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| T |
21567264 |
tctatactgggatttcactcctctgaagtgagtagttagtaaagtgagaaaatcaagaattcacattttaacaacccgtgatttgttacgtgtgtagata |
21567165 |
T |
|
| Q |
228 |
taatttcaactatgatttatatatgaacggtcgatattactcactttagagcacagaagcattgtcacaaacatggcaccgacacaaacatcggacacga |
327 |
Q |
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| T |
21567164 |
taatttcaactatgatttatttatgaacggtcgatattactcactttagagcacagaagcattgtcacaaacatggcaccgacacaaacattggacacga |
21567065 |
T |
|
| Q |
328 |
cactgacatagacaacaagtcgacaccggttaaaaactagataaaatcaattaatagaacataatcacatgtgtcac-----tgtcatgtcagacaccga |
422 |
Q |
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| T |
21567064 |
cactgacatagacaacaagtcgacaccggttaaaaactatataaaatcaattaatagaacataatcacatgtgtcactatcatgtcatgtcagacaccga |
21566965 |
T |
|
| Q |
423 |
cccatgtcgaacactatacacgccttccatcagaagtgtcggtctctgaccacgtcggacaccatacactctaacaaactctttcagcttgta |
515 |
Q |
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| T |
21566964 |
cccatgttggataccatacacgcctttcatcagaagtgtcggtctctgaccacgtcggacaccacacactctaacaaactctttcagcttgta |
21566872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 704 - 893
Target Start/End: Complemental strand, 21566704 - 21566515
Alignment:
| Q |
704 |
cataaaattttcacctttcttttttggttgagttaaaatagcacgataaatacgagaatctctaataggaagtttctgattggaagatgaaacgtttcga |
803 |
Q |
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| T |
21566704 |
cataaaattttcacctttcctttttggttgagttaaaatagcacgataaatacgagaatctctaataggaagtttctgattggaagatgaaacgtttcga |
21566605 |
T |
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| Q |
804 |
tttctctcagatcttcgtaagggaggactatgtgttgttgttgatttcatcttcttagtagatgaagaaggactaggaaccatattcttc |
893 |
Q |
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| T |
21566604 |
tttctctcagatcttcgtaagggaggactagatgttgttgttgatttcatcttcttagtagatgaagaaggactaggaaccattttcttc |
21566515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 588 - 640
Target Start/End: Complemental strand, 21566799 - 21566747
Alignment:
| Q |
588 |
cataactacccatctttacaacctaatttcacaacaaataattgtcctttcct |
640 |
Q |
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| T |
21566799 |
cataactacccatctttacaacctaatttcacaacaaataattgtcctttcct |
21566747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 32129777 - 32129738
Alignment:
| Q |
146 |
tcctctgaagtgagtagttagtaaagtgagaaaatcaaga |
185 |
Q |
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| T |
32129777 |
tcctctaaagtgagtagttagtaaagtgagaaaatcaaga |
32129738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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