View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3604_high_10 (Length: 414)

Name: NF3604_high_10
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3604_high_10
NF3604_high_10
[»] chr7 (3 HSPs)
chr7 (7-396)||(37007963-37008352)
chr7 (16-60)||(39391083-39391129)
chr7 (16-62)||(41715774-41715822)
[»] chr8 (3 HSPs)
chr8 (16-63)||(28425428-28425477)
chr8 (17-65)||(3467638-3467688)
chr8 (17-65)||(44926960-44927010)
[»] chr6 (6 HSPs)
chr6 (16-65)||(6208017-6208068)
chr6 (17-65)||(13739302-13739352)
chr6 (17-65)||(13744802-13744852)
chr6 (17-63)||(29409207-29409255)
chr6 (353-386)||(31531802-31531835)
chr6 (316-396)||(31537106-31537185)
[»] chr4 (4 HSPs)
chr4 (16-65)||(48550298-48550349)
chr4 (17-65)||(32238013-32238063)
chr4 (17-65)||(46830023-46830073)
chr4 (17-63)||(28987100-28987148)
[»] chr2 (1 HSPs)
chr2 (17-65)||(36548305-36548355)
[»] chr1 (8 HSPs)
chr1 (17-65)||(1199948-1199998)
chr1 (16-63)||(26058361-26058410)
chr1 (16-63)||(27801609-27801658)
chr1 (17-64)||(42850175-42850224)
chr1 (17-63)||(47123507-47123555)
chr1 (17-66)||(6166230-6166281)
chr1 (16-65)||(7826309-7826360)
chr1 (20-65)||(50977295-50977342)
[»] chr3 (4 HSPs)
chr3 (17-63)||(44939372-44939420)
chr3 (17-63)||(50664855-50664903)
chr3 (21-66)||(15511329-15511376)
chr3 (17-66)||(55154598-55154649)
[»] chr5 (1 HSPs)
chr5 (20-65)||(5710337-5710384)


Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 7 - 396
Target Start/End: Complemental strand, 37008352 - 37007963
Alignment:
Q  7 tccaagaatatcaattctataaaaatcaattttcgccaccgataccaaacacacacttatgtaagcatatgtagtgatccaaaaactcacttatacaccg 106  Q
    ||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37008352 tccaacaaaatcaattctataaaaatcagttttcgccaccgataccaaacacacacttatgtaagcatatgtagtgatccaaaaactcacttatacaccg 37008253  T
Q  107 gtggtggtggtaaaatttaaggctttggctcctcaagagttatgcatggtggtaatgatggtgatgatgttgaacaaatatattctcctcaagagtcatg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37008252 gtggtggtggtaaaatttaaggctttggctcctcaagagttatgcatggtggtaatgatggtgatgatgttgaacaaatatattctcctcaagagtcatg 37008153  T
Q  207 taagtgaaacatactcatgttgaaaaataaaggaaataattttttagtcgaaccaaaatagcaaacgaaaatggtgccaaaacatcgataggcactaagt 306  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37008152 taactgaaacatactcatgttgaaaaataaaggaaataattttttagtcgaaccaaaatagcaaacgaaaatggtgccaaaacatcgataggcactaagt 37008053  T
Q  307 gcacagacatatcgtgtaataagaagtaccgatcccacaaagactttgcatcgagtatcaatctcttttgctacggtgatcagctaaaag 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  37008052 gcacagacatatcgtgtaataagaaggaccgatcccacaaagactttgtatcgaatatcaatctcttttgctacggtgatcagctaaaag 37007963  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 39391129 - 39391083
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacac 60  Q
    ||||||||||| ||||||||||||||||||||  |||||||||||||    
T  39391129 atcaattctatcaaaatcaattttcgccaccgccataccaaacacac 39391083  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 41715774 - 41715822
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacac 62  Q
    ||||||||||| |||||||||| |||||||||  |||||||||||||||    
T  41715774 atcaattctatcaaaatcaattctcgccaccgccataccaaacacacac 41715822  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 28425477 - 28425428
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    ||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  28425477 atcaattctatcaaaatcaattttcgccaccgtcataccaaacacacact 28425428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 3467638 - 3467688
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  3467638 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 3467688  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 44926960 - 44927010
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  44926960 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 44927010  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6208068 - 6208017
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    ||||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  6208068 atcaattctatcaaaatcaattatcgccaccgctataccaaacacacactta 6208017  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13739302 - 13739352
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  13739302 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 13739352  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 13744802 - 13744852
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  13744802 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 13744852  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 29409255 - 29409207
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    |||||||||| ||||||||||||||||||||  |||||||| |||||||    
T  29409255 tcaattctattaaaatcaattttcgccaccgtcataccaaaaacacact 29409207  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 353 - 386
Target Start/End: Complemental strand, 31531835 - 31531802
Alignment:
Q  353 tgcatcgagtatcaatctcttttgctacggtgat 386  Q
    ||||||||||||||||||||||||||| ||||||    
T  31531835 tgcatcgagtatcaatctcttttgctatggtgat 31531802  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 396
Target Start/End: Complemental strand, 31537185 - 31537106
Alignment:
Q  316 tatcgtgtaataagaagtaccgatcccacaaagactttgcatcgagtatcaatctcttttgctacggtgatcagctaaaag 396  Q
    ||||| ||||||| ||||| |||||||| ||  |||| | || ||||||||||||||||||||| |||||| || ||||||    
T  31537185 tatcgcgtaataaaaagtatcgatcccagaagcactt-gtattgagtatcaatctcttttgctatggtgattagataaaag 31537106  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 48550298 - 48550349
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    ||||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  48550298 atcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 48550349  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 32238063 - 32238013
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  32238063 tcaattctatcaaaatcaattatcgccaccgctataccaaacacacactta 32238013  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 46830073 - 46830023
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  46830073 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 46830023  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 28987100 - 28987148
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    |||||||||| ||||||||||||| ||||||  ||||||||||||||||    
T  28987100 tcaattctatcaaaatcaattttcaccaccgccataccaaacacacact 28987148  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36548305 - 36548355
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| ||||||||||||| ||||||  ||||||||||||||||||    
T  36548305 tcaattctatcaaaatcaattttcaccaccgccataccaaacacacactta 36548355  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1199948 - 1199998
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  1199948 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactta 1199998  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 26058361 - 26058410
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    ||||||||||| |||||||||| |||||||||  ||||||||||||||||    
T  26058361 atcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 26058410  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 27801658 - 27801609
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    ||||||||||| |||||||||| |||||||||  ||||||||||||||||    
T  27801658 atcaattctatcaaaatcaattctcgccaccgtcataccaaacacacact 27801609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 42850224 - 42850175
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacactt 64  Q
    |||||||||| |||||||||| |||||||||  |||||||||||||||||    
T  42850224 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacactt 42850175  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 47123507 - 47123555
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    |||||||||| |||||||||||| |||||||  ||||||||||||||||    
T  47123507 tcaattctatcaaaatcaatttttgccaccgccataccaaacacacact 47123555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 6166230 - 6166281
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacacttat 66  Q
    |||||||||| |||||||||| || ||||||  |||||||||||||||||||    
T  6166230 tcaattctatcaaaatcaattctcaccaccgcgataccaaacacacacttat 6166281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 7826360 - 7826309
Alignment:
Q  16 atcaattctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    ||||||||||| ||||||||||||| ||||||  | ||||||||||||||||    
T  7826360 atcaattctatcaaaatcaattttctccaccgccaaaccaaacacacactta 7826309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 50977342 - 50977295
Alignment:
Q  20 attctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    ||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  50977342 attctatcaaaatcaattctcgccaccgccataccaaacacacactta 50977295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Complemental strand, 44939420 - 44939372
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||    
T  44939420 tcaattctatcaaaatcaattatcgccaccgctataccaaacacacact 44939372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 50664855 - 50664903
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacact 63  Q
    |||||||||| |||||||||| |||||||||  ||||||||||||||||    
T  50664855 tcaattctatcaaaatcaattctcgccaccgccataccaaacacacact 50664903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 15511376 - 15511329
Alignment:
Q  21 ttctataaaaatcaattttcgccaccg--ataccaaacacacacttat 66  Q
    |||||| |||||||||| |||||||||  |||||||||||||||||||    
T  15511376 ttctatcaaaatcaattatcgccaccgccataccaaacacacacttat 15511329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 55154598 - 55154649
Alignment:
Q  17 tcaattctataaaaatcaattttcgccaccg--ataccaaacacacacttat 66  Q
    |||||||||| |||||||||| ||||||| |  |||||||||||||||||||    
T  55154598 tcaattctatcaaaatcaattctcgccactgccataccaaacacacacttat 55154649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 5710384 - 5710337
Alignment:
Q  20 attctataaaaatcaattttcgccaccg--ataccaaacacacactta 65  Q
    ||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  5710384 attctatcaaaatcaattctcgccaccgccataccaaacacacactta 5710337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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