View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_11 (Length: 408)
Name: NF3604_high_11
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Original strand, 32749054 - 32749432
Alignment:
| Q |
10 |
aagaatatgcttcacaacaaagtggccaaaataaccccggtagcaatttctgccggcctattaaatgcctcaaggatgtcattttcacttgaatttaccc |
109 |
Q |
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| T |
32749054 |
aagaagatgcttcacaacaaagtggccaaaataacc--ggtagcaatttctgccggcctattaaatgcctcaaggatgtcattttcacttgaatttaccc |
32749151 |
T |
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| Q |
110 |
caacatcaaacnnnnnnntcactaatgcgggtgcaaattccatagctcagtggatgttagtttcttcctctttattacatttgaattttgtggacctttt |
209 |
Q |
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| T |
32749152 |
caacgtcaaacaaaaaaatcactaatgcgggtgcaaattccatagctcagtggatgttagtttcttcctctttattacatttgaattttgtggacctttt |
32749251 |
T |
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| Q |
210 |
tgtttggatttctatgtttgtagagattgaaaattggtactatgctgctttcacttggatgtgacagaagaaatagtgcttgtatttatctgtagttcgg |
309 |
Q |
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| T |
32749252 |
tgtttggatttctatgtttgtagagattgaaaattggtactatgctgctttcacttggatgtgacagaagaaatagtgcttgtatttatctgtagttcgg |
32749351 |
T |
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| Q |
310 |
ttgtattaccggaattctattatgtcattcgtttttatgaaattagtgtgtcaatttaattgaacatgtgacagctctaag |
390 |
Q |
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| T |
32749352 |
ttgtattaccggaattcgattatgtcatttgtttttatgaaattagtgtgtcaatttaattgaacatgtgacagctctaag |
32749432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 32706722 - 32706774
Alignment:
| Q |
212 |
tttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
264 |
Q |
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| T |
32706722 |
tttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcact |
32706774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 3281654 - 3281561
Alignment:
| Q |
18 |
gcttcacaacaaagtggccaaaataaccccggtagcaatttctgccggcctattaaatgcctcaaggatgtcattttcacttgaatttaccccaac |
113 |
Q |
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| T |
3281654 |
gcttcacaacaaactggccaaaataacc--ggtggcaatttctgccggcctattaaatgcctcaatgaagtccttttcacttgaattgaccccaac |
3281561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 264
Target Start/End: Original strand, 3001173 - 3001267
Alignment:
| Q |
170 |
tttcttcctctttattacatttgaattttgtggacctttttgtttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
264 |
Q |
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| T |
3001173 |
tttcttcctctttattatatttggattttgagtctttttgtgtctggatttctttgtttgtagatattgaaaattggtactgtgctgttttcact |
3001267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 338
Target Start/End: Original strand, 3001300 - 3001361
Alignment:
| Q |
277 |
aagaaatagtgcttgta-tttatctgtagttcggttgtattaccggaattctattatgtcatt |
338 |
Q |
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| T |
3001300 |
aagaaatagtgcttgtattttatctgtagttccgtggta-taccagaattctattatgtcatt |
3001361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 3285885 - 3285829
Alignment:
| Q |
57 |
ttctgccggcctattaaatgcctcaaggatgtcattttcacttgaatttaccccaac |
113 |
Q |
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| T |
3285885 |
ttctgctggcctgttaaatgcctcaaggaagtccttttcacttgaattaactccaac |
3285829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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