View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_13 (Length: 404)
Name: NF3604_high_13
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 2008272 - 2007883
Alignment:
| Q |
1 |
atccgtggtttcaatttttaatcactgcaactcctcatccttacattatcgttctaacatgatcaacttacatatatgtgtctgcaccaatgcaagttga |
100 |
Q |
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| T |
2008272 |
atccgtggtttcaatttttaatcactgcaactcctcatccttacattatcgttctaacatgatcaactttcatatatgtgtctgcaccaatgcaagttga |
2008173 |
T |
|
| Q |
101 |
gttgttactaataaacttctttatacattcaataatttctgacaaacaaaagaacatccataatagaatatgtattttggatacttaaatagatcctctg |
200 |
Q |
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| T |
2008172 |
gttgttactaataaacttctttatacattcaataatttctgacaaacaaaagaacatccataatagaatatgtattttggatacttaaatagatcctctg |
2008073 |
T |
|
| Q |
201 |
tgtactatgtactaatcaatcattttaatttttgtttaatgttattatttaataaatacattttctctccaatttaacatctcaaaaaatattattaaac |
300 |
Q |
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| T |
2008072 |
tgtactatgtactaatcaatcattttaattttt-tttaatgttattatttaataaatacatcgtctctccaatttaacatctcaaaaaatattattaaac |
2007974 |
T |
|
| Q |
301 |
aaatctaaccaatatttatatatcattatacattttaacaaaacttttttagtttaatataaatgtttccataaccaaagttttctatgaa |
391 |
Q |
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| T |
2007973 |
aaatctaaccaatatttatatatcattatacattttaacaaaacttttttagtttaatataaatgtttccataactaaagttctctatgaa |
2007883 |
T |
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