View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_17 (Length: 327)
Name: NF3604_high_17
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 43798129 - 43797822
Alignment:
| Q |
1 |
tgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagcataaacacatcaattagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43798129 |
tgacgaaccaactagtttgaacaagacataactcaaaaagtattcaagcgtcctcgctatcgcaccccatattaacaagagcataaacacattaattagc |
43798030 |
T |
|
| Q |
101 |
tgcacaatactagtcacaaactctaacctcccaatccatcgaaagcaaactaagaatcttgttaattaagcaccaacccactacactagtaggattacat |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43798029 |
tgcacaatactagtcacaaactctaacctcccaatccatcgcaagcaaactaagaatcttgttaattaagcaccaacccactacactagtaggattacat |
43797930 |
T |
|
| Q |
201 |
ccctttaaatttttcaccacaacttccgaatcaataaagagaatttaatttttcttgcacctgaattttctaaatttattcctcgaatcatcataattgg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43797929 |
ccctttaaatttttcaccacaacttccgaatcaataaagagaatttaatttttcttgcacctgaattttctaaatttattcctcgaatcatcataattgg |
43797830 |
T |
|
| Q |
301 |
gattgcat |
308 |
Q |
| |
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|||||||| |
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| T |
43797829 |
gattgcat |
43797822 |
T |
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