View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3604_high_19 (Length: 293)
Name: NF3604_high_19
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_19 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 277
Target Start/End: Original strand, 23330672 - 23330933
Alignment:
| Q |
16 |
atacatgtgactgtgtaagctttgcgttgtgcaccgtcgaaggttgacccttaattctgcaatttctactaaatattataatttgttgtatacgttgttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23330672 |
atacatgtgactgtgtaagctttgcgttgtgcaccgtcgaaggttgacccttaattctgcaatttctactaaatattataatttgttgtatacgttgttt |
23330771 |
T |
|
| Q |
116 |
tgtgaccgacgagttctttgtcctcttagaatcacattataattagtataattgttatgatgtgtactttaataagtatagttcaattgatctatgtaat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23330772 |
tgtgaccgacgagttctttgtcctcttagaatcacattataattagtataattgttatgatgtgtactttaataagtatagttcaattgatctatgtaat |
23330871 |
T |
|
| Q |
216 |
tgatgattaagttagaatttaaaaatatcaagacttgtaataacatgattacaattcataat |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23330872 |
tgatgattaagttagaatttaaaaatatgaagacttgtaataacatgattacaattcataat |
23330933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University