View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_2 (Length: 646)
Name: NF3604_high_2
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 308 - 633
Target Start/End: Original strand, 4101128 - 4101453
Alignment:
| Q |
308 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
407 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4101128 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4101227 |
T |
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| Q |
408 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
507 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101228 |
tttgttaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaatctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4101327 |
T |
|
| Q |
508 |
aaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgatcaaccaatagcagggaatgatggtgatgatttgtatgaggattt |
607 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
4101328 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatatgatcaatcaatagcagggaatgattgtgatgatttgtatgaggattt |
4101427 |
T |
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| Q |
608 |
gcaaatgtcaaggtatatgtttatga |
633 |
Q |
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|||||||||||||||||||||||||| |
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| T |
4101428 |
gcaaatgtcaaggtatatgtttatga |
4101453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 8 - 307
Target Start/End: Original strand, 4077977 - 4078276
Alignment:
| Q |
8 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
107 |
Q |
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| T |
4077977 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
4078076 |
T |
|
| Q |
108 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgcctt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078077 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgcctt |
4078176 |
T |
|
| Q |
208 |
gttcgactgcaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078177 |
gttcgactccaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
4078276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 308 - 595
Target Start/End: Original strand, 4078375 - 4078662
Alignment:
| Q |
308 |
caatgaaattgaagttgaaaaactaagttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaagctctatct |
407 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4078375 |
caatgaaattgaagttgaaaaactatgttttctctgttaaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaaactctatct |
4078474 |
T |
|
| Q |
408 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078475 |
tttgctaattttgctttggcaatgaacattttgtggttgttcgctaggcgaggaacctgttcatctagtgaatgttgcaaagttagcagttacagattat |
4078574 |
T |
|
| Q |
508 |
aaagcaaaatcactcctgacgttgatgcataaagtttaaatggctagggatatgatcaaccaatagcagggaatgatggtgatgattt |
595 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||||||| |
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| T |
4078575 |
aaagcaaaatcactcctgatgttgatgcataaagtttaaatggctagggatgtgatctatcaatagcagggaatgattgtgatgattt |
4078662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 170; E-Value: 7e-91
Query Start/End: Original strand, 122 - 307
Target Start/End: Original strand, 4100846 - 4101031
Alignment:
| Q |
122 |
gttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgccttgttcgactgcaaaa |
221 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4100846 |
gttgacacgtagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgccttgttcaactgcaaaa |
4100945 |
T |
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| Q |
222 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
307 |
Q |
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| T |
4100946 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcctaaactgagggaatgtgaaggatggtgtg |
4101031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 4502677 - 4502620
Alignment:
| Q |
225 |
tagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaa |
282 |
Q |
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||||||||||||||||| |||||| ||||| || |||||| |||||||||||||||| |
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| T |
4502677 |
tagggaggatatggactccgcatcagttgtacctaaagttcatggaattcctcccaaa |
4502620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 291
Target Start/End: Original strand, 19568715 - 19568774
Alignment:
| Q |
232 |
gatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaa |
291 |
Q |
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|||||||||| || ||||| |||||||||||||| ||||||||||| |||| ||| |||| |
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| T |
19568715 |
gatatggactatgtatcatctgtatctcaagttcatggaattcctctcaaagtgaaggaa |
19568774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 19569000 - 19569053
Alignment:
| Q |
346 |
aaatttgctaggcaatgacctattcgcctagcgaatctgctaattttttaaaag |
399 |
Q |
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|||||| |||||| | |||||||||| ||||||||| ||||||||||| ||||| |
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| T |
19569000 |
aaattttctaggcgaggacctattcgactagcgaatttgctaatttttgaaaag |
19569053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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