View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_22 (Length: 252)
Name: NF3604_high_22
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7095999 - 7096238
Alignment:
| Q |
1 |
cctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtttcctgcaatgcttaaacaagtcattacta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095999 |
cctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtttcctgcaatgcttaaacaagtcattactc |
7096098 |
T |
|
| Q |
101 |
tatcttcataaatactcatagaaccactatcttaactcacagaaacttggatttctaccactcaaatttaaatctttaaaaaacctctcaccctcaacat |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7096099 |
tatcttcataaatactcatagaaccactatcctaactcacagaaacttagatttctaccactcaaatttaaatctttaaaaaacctctcaccctcaacat |
7096198 |
T |
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| Q |
201 |
tcttgattcacattatccaccacctagatttacctgccta |
240 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
7096199 |
tcttgattcacattatccaccacctagatttacctgccta |
7096238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 8375803 - 8375609
Alignment:
| Q |
1 |
cctgagccatctgggcgttaacatctccagaagttccagtagtctccggagtacgtcttggaggcattgtttcctgcaatgcttaaacaagtcattacta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375803 |
cctgagccatctgggcgttaacatctccagaagttccaatagtctccggagtacgtcttggaggcattgtttcctgcaatgcttaaacaagtcattacta |
8375704 |
T |
|
| Q |
101 |
tatcttcataaatactcatagaaccactatcttaactcacagaaacttggatttctaccactcaaatttaaatctttaaaaaacctctcaccctc |
195 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8375703 |
tatcttcataaatactcatagaaccactatcttaactcacagaaacttagatttctatcactcaaatttaaatctttaaaaaacctctcaccctc |
8375609 |
T |
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