View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_25 (Length: 249)
Name: NF3604_high_25
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 14176774 - 14176537
Alignment:
| Q |
1 |
tttttcctcacaacctagtttgggagttatttttctcacgtatcatattcattaatatgtggaattacatgtgttggcatgtcattgctgattttgaaca |
100 |
Q |
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| T |
14176774 |
tttttcctcacaacctagtttgggagttatttttctcacgtatcatattcattaatatgtggaattacatgtgttggcatgtcattgctgattttgaaca |
14176675 |
T |
|
| Q |
101 |
gaacaaacgtgtcattaaaaataaaccctaaattttatgatgggaaaaatttctaaaacgattaaaatgtggggactaacatctcaagtttagaaatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14176674 |
gaacaaacgtgtcattaaaaataaaccctaaattttatgatgggaaaaatttctaaaacgattaaaatgttgggactaacatctcaagtttagaaatagt |
14176575 |
T |
|
| Q |
201 |
ggaactaaatcatacttaggttaaaatagggggtctct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
14176574 |
ggaactaaatcatacttaggttaaaatagggggtctct |
14176537 |
T |
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