View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3604_high_28 (Length: 237)
Name: NF3604_high_28
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_28 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 7644432 - 7644649
Alignment:
| Q |
18 |
gaatctacttctgattttattcttattctagtttatcaacgtcctttttaaataatattcttttgacatatgatatttaaaaaaggatcggtctcatatc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7644432 |
gaatctacttctgattttattcttattctagtttatcaacgtcctttttaaataatattcttttgacatatgatatttaaaaaaggatcggtctcatatc |
7644531 |
T |
|
| Q |
118 |
acatcaatgaaaaataaataaataactgaataaaccaacaagaaggcatcgatatgtggtgttttacaatttgtcattattaaaatcttcacaaacgttt |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7644532 |
acatcaatgaaaaataaatagataactgaataaaccaacaagaaggcatc--aatgtggtgttttataatttgtcattattaaaatcttcacaaacgttt |
7644629 |
T |
|
| Q |
218 |
ttggagaggaaagtggttcc |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
7644630 |
ttggagaggaaagtggttcc |
7644649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 7637167 - 7637246
Alignment:
| Q |
18 |
gaatctacttctgattttattcttattctagtttatcaacgtcctttttaaataatattcttttgacatatgatatttaaaa |
99 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||| ||||||| |
|
|
| T |
7637167 |
gaatctactaatgattttattcttattctagttcatcaataaccttttaaaataatattcttttg--atatgatttttaaaa |
7637246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 167
Target Start/End: Original strand, 7637265 - 7637319
Alignment:
| Q |
109 |
tctcatatcacatcaatgaaaaataaataaataactgaataaaccaacaagaaggcatc |
167 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
7637265 |
tctcttatcatatcaatgaaaaat----aaataactgaataaaccaacaagaaggcatc |
7637319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University