View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_3 (Length: 520)
Name: NF3604_high_3
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 45345349 - 45345852
Alignment:
| Q |
1 |
gtttgcaaataaagtgaactaatgaacatatgaactcagcgtagtcaacgaatagtacgatttccattcctctagtgaaggcacgaagatgtaacaaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345349 |
gtttgcaaataaagtgaactaatgaacatatgaactcagcgtagtcaacgaatagtacgatttccattcctctagtgaaggcacgaagatgtaacaaaag |
45345448 |
T |
|
| Q |
101 |
gaacacgagtcatattggtgctacaagggcaatttaaatatctacctgcaccgctaataggtgtagttcggattgctgagatttgttgtgacggaggtcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
45345449 |
gaacacgagtcatattggtgctacaagggcaatttaaatatctacctgcaccgctaataggtgtagttcggattgccgagatttgttgtgacggaggtcc |
45345548 |
T |
|
| Q |
201 |
actgtccttggagaagacctatatagaatgaacaagatataagcacacaaacaaatacctgcaaatgaatcttattgatcaattagatcaagttggtatg |
300 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45345549 |
actgtccttggaaaagacctatatagaatgaacaagatataagcacacaaacaaatacctgcaaatgaatcttattgatcaattagatcaagttggtatg |
45345648 |
T |
|
| Q |
301 |
aattataaaagggaatgataaagactatattcagttgaactcatgtaaggtagagaaaataattgaaatgtgaaagcaaaacaggaaaaatgacaacata |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
45345649 |
aattataaaagggaatgataaagactatattcagttgaactcatgtaaggtagagaaaataattgaaatgtgaaagcaaaacagaaaaaatgacaacata |
45345748 |
T |
|
| Q |
401 |
ccttgagtatattgctcagtgttatattcagatagcaagtagagccattaggtgaaaacacagcaacctgtatttgtattgttgagtataaggaaaagga |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
45345749 |
ccttgagtatattgctcagtgttatattcagatagcaagtagagccattaggtgaaaacacagcaacctgtatttgtattgttgagtataaggaaaaaga |
45345848 |
T |
|
| Q |
501 |
aaac |
504 |
Q |
| |
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|||| |
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| T |
45345849 |
aaac |
45345852 |
T |
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