View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3604_high_4 (Length: 502)
Name: NF3604_high_4
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 32598293 - 32598773
Alignment:
| Q |
18 |
attgatgatagtaggaagaaataaacagtaggggttggtcataggttccttatgnnnnnnnntttgacaatgatttggcgatgaaacttattgatcaaat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32598293 |
attgatgatagtaggaagaaataaacagtagggggtggtcataggttccttatgaaaaaaatattgacaatgatttggcgatgaaacttattgatcaaat |
32598392 |
T |
|
| Q |
118 |
ggtgaaaacttactcgtgcatgatggaaaatgtgtctcatttgtgcactatagacttgaccttgnnnnnnnn-aagcaaagtctgactaaaaattgttca |
216 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
32598393 |
ggcaaaaacttacttgtgcatgatggaaaatgtgtctcatttgtgcactatagacttgaccttgtttttttttaagtaaagtctgactaaaaattgttca |
32598492 |
T |
|
| Q |
217 |
ctaaggaatcaaactcaggttcttctgaataattgcattaagaaaaccgaattcatatgaattgaagaatgaaggtaaatggtagaaaagggtgaaaatg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32598493 |
ctaaggaatcaaactcaggttcttctgaataattgcattaagaaaaccgaattcatatgaattgaagaatgaaggtaaatggtagaaaaaggtgaaaatg |
32598592 |
T |
|
| Q |
317 |
aaatgaaattgacccaaatcccattggttgagtactcctcattagttgaccatattgttctactttctcttctctctcaagttttttctacgatgccaga |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32598593 |
aaatgaaattgacccaaatcccattggttgagtactcctcattagttcaccatattgttctactttctcttctctctcaagttttttctacgatgccaga |
32598692 |
T |
|
| Q |
417 |
gagagtttatatagtattgttttctcactgctaccttcttttgtcattaaattattatattattgttgcgtctgtgctcct |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
32598693 |
gagagtttatatagtattgttttctcactgctaccttcttttgtcattaaattattatattattgttgcgtttgtgttcct |
32598773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 35790344 - 35790287
Alignment:
| Q |
313 |
aatgaaatgaaattgacccaaatcccattggttgagtactcctcattagttgaccatattg |
373 |
Q |
| |
|
|||||||||||| |||||||||||| | ||||| ||| ||||||||||||||||||||| |
|
|
| T |
35790344 |
aatgaaatgaaaatgacccaaatcctagtggttaagt---cctcattagttgaccatattg |
35790287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 35052502 - 35052461
Alignment:
| Q |
130 |
ctcgtgcatgatggaaaatgtgtctcatttgtgcactataga |
171 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
35052502 |
ctcgtgcatgatgcaaaatttgtctcacttgtgcactataga |
35052461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University