View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_5 (Length: 450)
Name: NF3604_high_5
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 62 - 440
Target Start/End: Complemental strand, 2713087 - 2712700
Alignment:
| Q |
62 |
attttaatctctagatacttttaactcaaaatctannnnnnnnn-aaagctgaaacaaacacacccaatatatcattctattaaattgagtcagtttata |
160 |
Q |
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| T |
2713087 |
attttaatctctagatacttttaactcaaaatctattttttttttaaagctgaaacaaacacacccaatatatcattctcttaaattgaatcagtttata |
2712988 |
T |
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| Q |
161 |
tgataacttaattatttatctaacgtaatgaacaagaaaaatcacatcactaaacataacaacaatatattgcatcagtgcaagtagaaaagcgattata |
260 |
Q |
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| T |
2712987 |
tgataacttaattacttacctaacgtaatgaacaagaaaaatcacatcactaaacataacaacaatatattgcatcagtgcaagtagaaaagcgattata |
2712888 |
T |
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| Q |
261 |
cattacatcacaacaagaatgcaaacagaaaaaacgattatgtaacacgcttttgaataat--------nnnnnnnnntcgagaaattaaaatgtgatca |
352 |
Q |
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| T |
2712887 |
cattacatcacaacaagaatgcaaacagaaaaaacgattatgtaacacgcttttgaataataaaaaaaaaaaaaaaaatcgagaaattaaaatgtgatca |
2712788 |
T |
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| Q |
353 |
tcggaaagcagagcgaaaacagaaaacgcgcatggaatgaagaaatagaaacacggaaagtaaattacctgattattgcggttctctg |
440 |
Q |
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| T |
2712787 |
tcggaaagcagagtgaaaacagaaaacgcgcatggaatgaagaaatagaaacacagaaagtaaattacctgattattacggttctctg |
2712700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 2721965 - 2721925
Alignment:
| Q |
16 |
cagtttcagttttcctcctttcaaaatatcaaaatattcca |
56 |
Q |
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| T |
2721965 |
cagtttcagtttttctcctttccaaatatcaaaatattcca |
2721925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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