View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_high_6 (Length: 448)
Name: NF3604_high_6
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Complemental strand, 15001351 - 15000928
Alignment:
| Q |
18 |
cattgggcagataattccagccatcacgggaaaagtgacaatgagcttcaatatgctttgttttgtgctatatgaaacgctgatttactatcacaatata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15001351 |
cattgggcagataattccagccatcacgggaaaagtgacaatgagcttcaatatgctttgttttgtgctatatgaaacgctgatttactatcacaatata |
15001252 |
T |
|
| Q |
118 |
atcgcatccctttggaataaataactcccatatcaccaagtaactgcttgtgccatttaattcacatgtagtcatcgccatagagtgatactcggcctct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15001251 |
atcgcatccctttggaataaataactcccatatcaccaagtaactgcttgtgccatttaattcacatgtagtcatcgccatagagtgatactcggcctct |
15001152 |
T |
|
| Q |
218 |
ccagaagaacaacaaagttggatgtttcttacttttccaagacaccggagaaagaccaagtaacaccacccattaggtcaaagaatgtatcgtaagggga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15001151 |
ccagaagaacaacaaagttggatgtttcttacttttccaagacaccggagaaagaccaagtaacaccacccattaggtcaaagaatgtatcgtaagggga |
15001052 |
T |
|
| Q |
318 |
caactcgcccaatccgagtcacaccatccctctagtttcaattcactatcaaactgaagtacaataccttgggcccgagtgtttcttcaaatatctaaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15001051 |
caactcgcccaatccgagtcacaccatccctctagtttcaattcactatcaaactgaagtacaataccttgggcccgagtatttcttcaaatatctaaaa |
15000952 |
T |
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| Q |
418 |
cccataaggttgcttccctatgct |
441 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
15000951 |
cccataaggttgcttcccaatgct |
15000928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 78 - 441
Target Start/End: Original strand, 27244059 - 27244425
Alignment:
| Q |
78 |
ttttgtgctatatgaaacgctgatttactatcacaatataatcgcatccctttggaataaataactcccatatcaccaagtaactgcttgtgccattt-a |
176 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| |||||| ||||||||| ||||| | ||||||||| ||||||||||||||||||| ||||||| | |
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| T |
27244059 |
ttttgagctatatgcaacgctgatttactatcacagtataattgcatcccttgggaatgactaactcccaaatcaccaagtaactgcttgagccatttta |
27244158 |
T |
|
| Q |
177 |
attcacatgtagtcatcgccatagagtgatactcggcctctccagaagaacaacaaa--gttggatgtttcttacttttccaagacaccggagaaagacc |
274 |
Q |
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| |||||||||||||||||||||||| ||||||| |||||| ||||||||| | | | ||||| ||||||||| ||||||||||||||||||||||||| |
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| T |
27244159 |
actcacatgtagtcatcgccatagagcgatactcagcctctgcagaagaacgagagacggttggctgtttcttagttttccaagacaccggagaaagacc |
27244258 |
T |
|
| Q |
275 |
aagtaacaccacccattaggtcaaagaatgtatcgtaaggggacaactcgcccaatccgagtcacaccatccctctagtttcaattcactatcaaactga |
374 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
27244259 |
aagtaacaccacccatccagtcaaagaacgtctcgtaaggggacaactcgcccaatccgagtcacaccatccctctagtttcaattcactatcagaccga |
27244358 |
T |
|
| Q |
375 |
agtacaataccttgggcccgagtgtttcttcaaatatctaa-aacccataaggttgcttccctatgct |
441 |
Q |
| |
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|||| |||||||| |||||| |||||||||||| ||||||| ||||| ||||| |||||||| ||||| |
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| T |
27244359 |
agtagaatacctt-ggcccgggtgtttcttcaagtatctaacaacccttaaggctgcttcccaatgct |
27244425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 78 - 441
Target Start/End: Original strand, 42103623 - 42103989
Alignment:
| Q |
78 |
ttttgtgctatatgaaacgctgatttactatcacaatataatcgcatccctttggaataaataactcccatatcaccaagtaactgcttgtgccattt-a |
176 |
Q |
| |
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||||| |||||||| |||||||||||||||||||| |||||| ||||||||| ||||| | ||||||||| ||||||||||||||||||| ||||||| | |
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| T |
42103623 |
ttttgagctatatgcaacgctgatttactatcacagtataattgcatcccttgggaatgactaactcccaaatcaccaagtaactgcttgagccatttta |
42103722 |
T |
|
| Q |
177 |
attcacatgtagtcatcgccatagagtgatactcggcctctccagaagaacaacaaa--gttggatgtttcttacttttccaagacaccggagaaagacc |
274 |
Q |
| |
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| |||||||||||||||||||||||| ||||||| |||||| ||||||||| | | | ||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
42103723 |
actcacatgtagtcatcgccatagagcgatactcagcctctgcagaagaacgagagacggttggctgtttcttagttttccaagacaccggagaaagatc |
42103822 |
T |
|
| Q |
275 |
aagtaacaccacccattaggtcaaagaatgtatcgtaaggggacaactcgcccaatccgagtcacaccatccctctagtttcaattcactatcaaactga |
374 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
42103823 |
aagtaacaccacccatccagtcaaagaacgtctcgtaaggggacaactcgcccaatccgagtcacaccatccctctagtttcaattcactatcagaccga |
42103922 |
T |
|
| Q |
375 |
agtacaataccttgggcccgagtgtttcttcaaatatctaa-aacccataaggttgcttccctatgct |
441 |
Q |
| |
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|||| |||||||| |||||| |||||||||||| ||||||| ||||| ||||| |||||||| ||||| |
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|
| T |
42103923 |
agtagaatacctt-ggcccgggtgtttcttcaagtatctaacaacccttaaggctgcttcccaatgct |
42103989 |
T |
|
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