View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_12 (Length: 407)
Name: NF3604_low_12
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 8376271 - 8375873
Alignment:
| Q |
1 |
agtacctggacaatgtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgttgtaactttagaaaatcatcacccaatttagttcttgcact |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376271 |
agtacctggacagtgtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgttgtaactttagaaaatcatcacccaatttagttcttgcact |
8376172 |
T |
|
| Q |
101 |
ctgaggaaaatatctttccaagaacttggtctgaaaaacctcccaactgatttcctcttgcgcattttctaacatatttttagcatttttccaccaatac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376171 |
ctgaggaaaatatctttccaagaacttggtctgaaaaacctcccaactgatttcctcttgcgcattttctaacatatttttagcatttttccaccaatac |
8376072 |
T |
|
| Q |
201 |
tctgcatcaccaagcaacaaatatgtggcatatttcacctttgattcttcaggacagttaatcactttcaaaatcttctccacttcttgtagccacaaat |
300 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8376071 |
tctgcatcaccaagcaacaaatgtgtggcatatttcacctttgattcttcaggacagttaatcactttcaaaatcttctccacttcttgtagccacaaat |
8375972 |
T |
|
| Q |
301 |
cagccttctctgggtctaattctccatggaattgaggtggattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgct |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8375971 |
cagccttctctgggtctaattctccatggaattgaggtggattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgct |
8375873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 7095531 - 7095929
Alignment:
| Q |
1 |
agtacctggacaatgtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgttgtaactttagaaaatcatcacccaatttagttcttgcact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7095531 |
agtacctggacaatgtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgttgtaacttcagaaaatcatcacccaatttagttcttgcact |
7095630 |
T |
|
| Q |
101 |
ctgaggaaaatatctttccaagaacttggtctgaaaaacctcccaactgatttcctcttgcgcattttctaacatatttttagcatttttccaccaatac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095631 |
ctgaggaaaatatctttccaagaacttggtctgaaaaacctcccaactgatttcctcttgcgcattttctaacatatttttagcatttttccaccaataa |
7095730 |
T |
|
| Q |
201 |
tctgcatcaccaagcaacaaatatgtggcatatttcacctttgattcttcaggacagttaatcactttcaaaatcttctccacttcttgtagccacaaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095731 |
tctgcatcaccaagcaacaaatatgtggcatatttcacctttgattcttcaggacagttaatcactttcaaaatcttctccacttcttgtagccacaaat |
7095830 |
T |
|
| Q |
301 |
cagccttctctgggtctaattctccatggaattgaggtggattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgct |
399 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7095831 |
cagccctctctgggtctaattctccatggaattgaggtggattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctgct |
7095929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 15 - 397
Target Start/End: Complemental strand, 15420854 - 15420472
Alignment:
| Q |
15 |
gtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgttgtaactttagaaaatcatcacccaatttagttcttgcactctgaggaaaatatc |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
15420854 |
gtctcaaaccttgctgcatatgctcctaccgtcatgttgccctgtcgtaacttcagaaaatcatcacccaatttagttcttgcactctgagggaaaaatc |
15420755 |
T |
|
| Q |
115 |
tttccaagaacttggtctgaaaaacctcccaactgatttcctcttgcgcattttctaacatatttttagcatttttccaccaatactctgcatcaccaag |
214 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
15420754 |
tttccaagaacttggcttgaaaaacctcccaagtgatttcctcttgagcattctctaacatacttttggcatttttccaccaatactctgcatcaccaag |
15420655 |
T |
|
| Q |
215 |
caacaaatatgtggcatatttcacctttgattcttcaggacagttaatcactttcaaaatcttctccacttcttgtagccacaaatcagccttctctggg |
314 |
Q |
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||||| ||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
15420654 |
caacagataagtggcatatttcaccttagaatcttcaggacagttaatcacattcaaaatcttttcaacttcttgtagccacaaatcagccttctctggg |
15420555 |
T |
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| Q |
315 |
tctaattctccatggaattgaggtggattgtgacgacggaaatctgccaatccccttgaatctgcttccctatcttctctctg |
397 |
Q |
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|| | ||| || |||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| |||||||||||||||| |
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| T |
15420554 |
tccacttccccgtggaattggggtggattgtgacgacgaaaatcagccaagccccttgaatctgctgccctatcttctctctg |
15420472 |
T |
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