View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_15 (Length: 360)
Name: NF3604_low_15
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 18 - 352
Target Start/End: Complemental strand, 32566464 - 32566129
Alignment:
| Q |
18 |
atttgcaactcttaaacaacataacatctttgcaactactaaaaagggagaaaatctaacaatgaagtggagaaaatatatataaataatcaatcattat |
117 |
Q |
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| T |
32566464 |
atttgcaactcttaaacaacataacatctttgcaactactaaaaagggtgaaaatctaacaatgaagtggagaaaatctatataaataatcaatcattat |
32566365 |
T |
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| Q |
118 |
tgagattttgacacgggttctttgtaagattt-gtattctttcatgttcaaattatttttcaaaaaccaagtacactttttcattgtgagtgttgtaaag |
216 |
Q |
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|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32566364 |
cgagattttgacacgagttctttgtaagattttgtattctttcatgttcaaattatttttcaaaaaccaagtacactttttcattgcgagtgttgtaaag |
32566265 |
T |
|
| Q |
217 |
ggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatctataagactcccgagtttaagattct |
316 |
Q |
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| T |
32566264 |
ggtgtaaaagaaaccttgtctttgtaaagattttcattgagagcatcctcgagggtccaagagagtacaatatctataagactcccgagtttaagattct |
32566165 |
T |
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| Q |
317 |
cttcacctccatttctagtcttctccatcctttgct |
352 |
Q |
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| T |
32566164 |
cttcacttccatttctagtcttctccatcctttgct |
32566129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 73 - 302
Target Start/End: Original strand, 32648017 - 32648253
Alignment:
| Q |
73 |
ctaacaatgaagtggagaaaatatatataaataatcaatcattattgagattttgacacgggttctttgtaaga-------tttgtattctttcatgttc |
165 |
Q |
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| T |
32648017 |
ctaacaatgaagtggagaaaatctatataaacaatcaatcattattgagattttaacaccatttctttgtaacacaatgaatttgtactctttcatgttc |
32648116 |
T |
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| Q |
166 |
aaattatttttcaaaaaccaagtacactttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
265 |
Q |
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| T |
32648117 |
aaattctttttcaaaaaccaagttcactttttcattgtgagtattgaaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcct |
32648216 |
T |
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| Q |
266 |
cgagggtccaagagagtacaatatctataagactccc |
302 |
Q |
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| T |
32648217 |
cgagggtccaagaaagtacaatatctataagactccc |
32648253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 194 - 292
Target Start/End: Original strand, 32527666 - 32527763
Alignment:
| Q |
194 |
ttttcattgtgagtgttgtaaagggtgtaaaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatcta |
292 |
Q |
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| T |
32527666 |
ttttcattgtgagtgttcaaaagg-tgtaaatgaaaccttgtgtttgtaaagattttcgttgagaacatcctcgaggggccatgagagtacaatatcta |
32527763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 286
Target Start/End: Original strand, 32534001 - 32534064
Alignment:
| Q |
223 |
aaagaaaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaa |
286 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||| |||||| |||||||||| |
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| T |
32534001 |
aaagaaaccttgtctttgtaaagattttcgttcaaaacatcctcgtaggtccatgagagtacaa |
32534064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 32516951 - 32517016
Alignment:
| Q |
228 |
aaccttgtctttgtaaagattttcattgagaacatcctcgagggtccaagagagtacaatatctat |
293 |
Q |
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||||| || |||| |||||||||||||||||| |||||| || |||||||||| |||||||||||| |
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| T |
32516951 |
aacctggtatttgaaaagattttcattgagaatatcctctagagtccaagagaatacaatatctat |
32517016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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