View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3604_low_24 (Length: 250)

Name: NF3604_low_24
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3604_low_24
NF3604_low_24
[»] chr5 (4 HSPs)
chr5 (16-250)||(6821586-6821824)
chr5 (16-126)||(15291405-15291515)
chr5 (16-126)||(27337308-27337418)
chr5 (16-126)||(433907-434018)
[»] chr6 (9 HSPs)
chr6 (16-126)||(34305112-34305222)
chr6 (18-126)||(32116250-32116358)
chr6 (18-126)||(32120543-32120651)
chr6 (34-126)||(45090-45182)
chr6 (16-126)||(10402344-10402453)
chr6 (16-126)||(8374679-8374790)
chr6 (52-126)||(7199992-7200065)
chr6 (58-126)||(22986534-22986602)
chr6 (58-126)||(23801792-23801860)
[»] chr2 (10 HSPs)
chr2 (16-126)||(18744400-18744510)
chr2 (16-118)||(28225622-28225724)
chr2 (16-126)||(17345253-17345363)
chr2 (16-126)||(20142127-20142237)
chr2 (18-126)||(8588700-8588808)
chr2 (14-126)||(41867288-41867400)
chr2 (16-126)||(9684796-9684907)
chr2 (32-126)||(34185457-34185551)
chr2 (33-126)||(19161226-19161318)
chr2 (50-125)||(40856987-40857062)
[»] scaffold0186 (1 HSPs)
scaffold0186 (16-126)||(20340-20450)
[»] chr4 (5 HSPs)
chr4 (32-126)||(53171113-53171207)
chr4 (32-124)||(56461512-56461605)
chr4 (32-126)||(16958150-16958243)
chr4 (32-126)||(23809097-23809191)
chr4 (59-126)||(48505623-48505690)
[»] chr8 (7 HSPs)
chr8 (16-109)||(10950581-10950674)
chr8 (16-109)||(10958586-10958679)
chr8 (17-125)||(500843-500951)
chr8 (32-126)||(24125642-24125736)
chr8 (16-126)||(37517704-37517814)
chr8 (29-113)||(40840181-40840265)
chr8 (56-126)||(25021224-25021294)
[»] chr3 (7 HSPs)
chr3 (16-126)||(49018567-49018677)
chr3 (16-126)||(52411287-52411394)
chr3 (55-118)||(53786326-53786389)
chr3 (18-112)||(43123780-43123874)
chr3 (32-126)||(29862413-29862510)
chr3 (59-113)||(45676210-45676264)
chr3 (88-125)||(7501640-7501677)
[»] chr7 (5 HSPs)
chr7 (19-126)||(19277784-19277891)
chr7 (16-113)||(4175807-4175903)
chr7 (32-126)||(5827869-5827963)
chr7 (52-126)||(47679736-47679810)
chr7 (79-126)||(32585762-32585809)
[»] chr1 (6 HSPs)
chr1 (16-99)||(28040510-28040593)
chr1 (32-126)||(19036042-19036135)
chr1 (16-125)||(972268-972375)
chr1 (56-126)||(38732198-38732268)
chr1 (53-106)||(15585495-15585548)
chr1 (52-126)||(36154681-36154755)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 6821586 - 6821824
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||||||    
T  6821586 attttgacgttaacagttttactagcaaagacatcgtccctcctaaaatataaaatgttttggcgagtgctctttttagtaaaagtgttcaagatatgaa 6821685  T
Q  116 agtgaagtttgcatacaacacattttcaagatttccttcagactatcccctattattggatattgnnnnnnngtgataactt----acaaatcaatttat 211  Q
    | ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||       ||||||||||    ||||||||||||||    
T  6821686 aatgaagtttgcatacaacacattttcaaaatttccttcaggctatcccctattattggatattgaaaaaaagtgataacttagagacaaatcaatttat 6821785  T
Q  212 tctttagtgaagttcttgagtgatggtacattgatattt 250  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  6821786 tctttactgaagttcttgagtgatggtacattgatattt 6821824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 15291405 - 15291515
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||||||| || ||||||||||||||||||| ||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  15291405 attttgacgttagcagttttactagcaaagacaccgtccctcctaaagcggaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgga 15291504  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  15291505 agttaagtttg 15291515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 27337418 - 27337308
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||||||| || ||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||| |    
T  27337418 attttgacgttagcagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaagttgttcaagatatgga 27337319  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  27337318 agttaagtttg 27337308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 434018 - 433907
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatg-ttttgacgagtgctctttttagtaaaagtgttcaagatatga 114  Q
    |||||||||||| || ||||||| |||| |||||| |||||||||||| |||||||| |||||  |||| ||||||||||||||  |||||||||||||     
T  434018 attttgacgttagcagttttacttgcaaggacaccgtccctcctaaagcacaacatgtttttggtgagtcctctttttagtaaagttgttcaagatatgg 433919  T
Q  115 aagtgaagtttg 126  Q
    || | |||||||    
T  433918 aacttaagtttg 433907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 34305222 - 34305112
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||||||||||| ||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |    
T  34305222 attttgacgttaacagttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaattgttcaagatatgga 34305123  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  34305122 agttaagtttg 34305112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 32116358 - 32116250
Alignment:
Q  18 tttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaag 117  Q
    |||||||||| || ||||||||||||||||| | ||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||    
T  32116358 tttgacgttagcagttttactagcaaagacaacgtccttcctaaagcacaacatgttttgacgagtgatctttttagtaaaagtgttcaagatatggaag 32116259  T
Q  118 tgaagtttg 126  Q
    | |||||||    
T  32116258 ttaagtttg 32116250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 32120651 - 32120543
Alignment:
Q  18 tttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaag 117  Q
    |||||||||| |||||||||| || |||||| | |||||||||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||| |||    
T  32120651 tttgacgttagcaattttacttgcgaagacaacgtccctcctaaagcacaacatgttttggcgagtgctctttttaggtaaagtgttcaagatatggaag 32120552  T
Q  118 tgaagtttg 126  Q
    | |||||||    
T  32120551 ttaagtttg 32120543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 34 - 126
Target Start/End: Original strand, 45090 - 45182
Alignment:
Q  34 ttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  ||||| |||| |||||||    
T  45090 ttaccagcaaagacaccgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcagaatatggaagttaagtttg 45182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 10402453 - 10402344
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||||||| || ||||||| | || |||| | |||||||||||| ||||||||||||||||||||||||||||||| |||  |||||||||||| |    
T  10402453 attttgacgttagcagttttacttgtaaggacatcgtccctcctaaagcacaacatgttttgacgagtgctctttttagt-aaatcgttcaagatatgga 10402355  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  10402354 agttaagtttg 10402344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 8374679 - 8374790
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctc--ctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatg 113  Q
    |||||||| ||| ||||||||||||||| |||||||||||||   ||||| ||| ||| |||||| ||  | ||||||||||||||||||||| ||||||    
T  8374679 attttgactttagcaattttactagcaaggacaccatccctcatataaagcacatcatattttgatgaacg-tctttttagtaaaagtgttcaggatatg 8374777  T
Q  114 aaagtgaagtttg 126  Q
     ||||||| ||||    
T  8374778 gaagtgaaatttg 8374790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 7199992 - 7200065
Alignment:
Q  52 tccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||||||| |||||||||||||  || |||| |||||||||||| || |||||||||| ||||||||||||    
T  7199992 tccctcctaaagcacaacatgttttggtgaatgct-tttttagtaaaattgatcaagatatggaagtgaagtttg 7200065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 22986602 - 22986534
Alignment:
Q  58 ctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||| |||| |||||||| || |||   ||||||||||||||||| |||||| ||||||||||||||    
T  22986602 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttg 22986534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 23801792 - 23801860
Alignment:
Q  58 ctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||| |||| |||||||| || |||   ||||||||||||||||| |||||| ||||||||||||||    
T  23801792 ctaaagcacaatatgttttggcgtgtgtcttttttagtaaaagtgttaaagataagaaagtgaagtttg 23801860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 18744400 - 18744510
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||| |||| || ||||||||||||||||||| || ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |    
T  18744400 attttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcaggatatgga 18744499  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  18744500 agttaagtttg 18744510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 28225724 - 28225622
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||||||||||| ||||||| |||| |||||| |||||||||||| ||||||| ||||| ||||||||||||||||||||| ||||||||||||| |    
T  28225724 attttgacgttaacagttttacttgcaaggacaccgtccctcctaaagcacaacatattttggcgagtgctctttttagtaaaattgttcaagatatgga 28225625  T
Q  116 agt 118  Q
    |||    
T  28225624 agt 28225622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 17345363 - 17345253
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||| |||| ||||||||||||||||||| || |||||||||||| ||||| |||||||  |||||||||||||||||||||||||||  ||||| |    
T  17345363 attttgatgttagcaattttactagcaaagacgccgtccctcctaaagcacaacttgttttggtgagtgctctttttagtaaaagtgttcagcatatgga 17345264  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  17345263 agttaagtttg 17345253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 20142127 - 20142237
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||| |||| || ||||||||||||||||||| || ||||||||| ||||||||| ||| |||||||||||||||||||||| ||||| |||||| |    
T  20142127 attttgatgttagcagttttactagcaaagacaccgtctctcctaaagcacaacatgtcttggcgagtgctctttttagtaaaagcgttcaggatatgga 20142226  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  20142227 agttaagtttg 20142237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 8588808 - 8588700
Alignment:
Q  18 tttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaag 117  Q
    ||||||||||||| ||||||| |||| | || ||||||||| |||| ||||||||||||| ||||||  ||||||| ||||||||||||||||||| |||    
T  8588808 tttgacgttaacagttttacttgcaagggcaacatccctccaaaagcacaacatgttttggcgagtgtcctttttaataaaagtgttcaagatatggaag 8588709  T
Q  118 tgaagtttg 126  Q
    | |||||||    
T  8588708 tcaagtttg 8588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 14 - 126
Target Start/End: Original strand, 41867288 - 41867400
Alignment:
Q  14 atattttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatg 113  Q
    ||||||||| |||| || |||||||| |||||||||  |||||||||||  ||||||| ||||| ||||||||||||||||||||||||| || ||||||    
T  41867288 atattttgatgttagcatttttactaacaaagacactgtccctcctaaaacacaacatattttggcgagtgctctttttagtaaaagtgtccaggatatg 41867387  T
Q  114 aaagtgaagtttg 126  Q
     |||| |||||||    
T  41867388 gaagtcaagtttg 41867400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 9684796 - 9684907
Alignment:
Q  16 attttgacgttaacaattttact-agcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatga 114  Q
    ||||||| |||| || ||||||| |||||||||| | |||||| ||||| |||||||||||||  |||||||||||||| |||||||||||| ||||||     
T  9684796 attttgatgttagcatttttacttagcaaagacatcgtccctcttaaagcacaacatgttttggtgagtgctctttttaataaaagtgttcaggatatgg 9684895  T
Q  115 aagtgaagtttg 126  Q
    |||| |||||||    
T  9684896 aagttaagtttg 9684907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 34185457 - 34185551
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||| ||||  ||||| |||| ||||||||| ||||| ||||| |||||||  |||||||||||||||||||||||||| ||||||||||||    
T  34185457 ttttacttgcaagaacaccgtcccacctaaagtagaacatattttggcgagtgccttttttagtaaaagtgttcaagatatggaagtgaagtttg 34185551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 126
Target Start/End: Original strand, 19161226 - 19161318
Alignment:
Q  33 tttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||||||| ||||| |||||||||| | |||||||| |||| | ||||||||||||  ||||| ||||||||||||| |||| |||||||    
T  19161226 tttactagcaaaaacaccgtccctcctaatgcacaacatg-tttggcaagtgctctttttcataaaaatgttcaagatatggaagttaagtttg 19161318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 125
Target Start/End: Complemental strand, 40857062 - 40856987
Alignment:
Q  50 catccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagttt 125  Q
    ||||||| ||||||| |||| |||||||||   ||  |||||||||||||||||| | ||||||||||| ||||||    
T  40857062 catccctactaaagtccaacttgttttgacacatgtcctttttagtaaaagtgtttaggatatgaaagtaaagttt 40856987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 20450 - 20340
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||| |||||||||||||| |||||||| || || ||||||||| ||||||||||||| ||| ||| ||||||| |||||||||||||||||||||    
T  20450 attttgacattaacaattttacttgcaaagactccgtctctcctaaagcacaacatgttttggcgaatgccctttttaataaaagtgttcaagatatgaa 20351  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  20350 agttaagtttg 20340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 53171207 - 53171113
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||||||||||||| | |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||    
T  53171207 ttttactagcaaagacatcgtccctcctaaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcaaaatatggaagttaagtttg 53171113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 56461512 - 56461605
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgc-tctttttagtaaaagtgttcaagatatgaaagtgaagtt 124  Q
    |||||||||||| ||||   |||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||||||||||| |||| |||||    
T  56461512 ttttactagcaaggacattgtccctcctaaagcacaacatattttggcgagtgcttttttttagtaaaagtgttcaagatatggaagttaagtt 56461605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 16958243 - 16958150
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||| || |||||||||  | |||| ||||| ||||||||||||| ||||||||||||| |||||||||| ||| |||||| |||| |||||||    
T  16958243 ttttagtaacaaagacactgttcctcataaagcacaacatgttttg-cgagtgctcttttgagtaaaagtgctcacgatatggaagttaagtttg 16958150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 126
Target Start/End: Original strand, 23809097 - 23809191
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||||| || |||||| |||||| ||||| ||||||| |||||  || || | |||||||||||| ||||||||||||| ||||||| ||||    
T  23809097 ttttactagtaaggacaccgtccctcataaagcacaacatattttggtgattggtttttttagtaaaaatgttcaagatatggaagtgaaatttg 23809191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 126
Target Start/End: Original strand, 48505623 - 48505690
Alignment:
Q  59 taaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||||| || ||||||||| || |||||||||||||| | || ||||||||||||| |||||||    
T  48505623 taaagtacaatatattttgacgaatgttctttttagtaaaaatatttaagatatgaaagttaagtttg 48505690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 10950581 - 10950674
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaaga 109  Q
    |||||||||||| |||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  10950581 attttgacgttagcaattttacttgcaaggacaccattccttctaaagcacaacatgttttgacgagtgctctttatagtaaaagtgttcaaga 10950674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 109
Target Start/End: Original strand, 10958586 - 10958679
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaaga 109  Q
    |||||||||||| |||||||||| |||| |||||||| ||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  10958586 attttgacgttagcaattttacttgcaaggacaccattccttctaaagcacaacatgttttgacgagtgctctttatagtaaaagtgttcaaga 10958679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 125
Target Start/End: Complemental strand, 500951 - 500843
Alignment:
Q  17 ttttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaa 116  Q
    ||||||||||| |||||||| ||| ||||| ||| |||||  ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| ||    
T  500951 ttttgacgttagcaattttattagtaaagataccgtcccttttaaagcacaacatgttttggcgagtgctttttttagtaaaagtgttcaagatatggaa 500852  T
Q  117 gtgaagttt 125  Q
    || ||||||    
T  500851 gttaagttt 500843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 24125736 - 24125642
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||||||||||||| |  ||||||||||| | |||||||||||  |||||||||||||||||||||||||||||||||| |||| |||||||    
T  24125736 ttttactagcaaagacatcgcccctcctaaagcataacatgttttggtgagtgctctttttagtaaaagtgttcaagatatggaagttaagtttg 24125642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 37517814 - 37517704
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    ||||||| |||| || |||||||||||| |||||| |||||||||||| || |||||||||| |||||| ||||||||| |||||| |||| ||||||||    
T  37517814 attttgatgttagcagttttactagcaatgacaccgtccctcctaaagcacgacatgttttggcgagtgttctttttagaaaaagttttcatgatatgaa 37517715  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  37517714 agttaagtttg 37517704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 40840265 - 40840181
Alignment:
Q  29 caattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatg 113  Q
    ||||||||||||||| |||||| |||||| |||||   ||||||||||||||||||   ||||||||||||||||||| ||||||    
T  40840265 caattttactagcaaggacaccgtccctcttaaagccgaacatgttttgacgagtgtcatttttagtaaaagtgttcaggatatg 40840181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 25021224 - 25021294
Alignment:
Q  56 tcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||| ||||||||||||| ||||||| ||||||| |||| |||||||||||||| |||| |||||||    
T  25021224 tcctaaagcacaacatgttttggcgagtgccctttttattaaaggtgttcaagatatggaagttaagtttg 25021294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 49018677 - 49018567
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||||||| || |||||||||||||||||   || ||||||||| ||||||||||||| ||||||||||||||| ||||||| ||||||||||| |    
T  49018677 attttgacgttagcagttttactagcaaagacattgtctctcctaaagcacaacatgttttggcgagtgctctttttaataaaagttttcaagatatgta 49018578  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  49018577 agttaagtttg 49018567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 52411287 - 52411394
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||| ||| || ||||||| |||| |||||| ||| |||||||| |||   ||||||  |||||||||||||||||||||||||| |||||||| |    
T  52411287 attttgacattatcagttttacttgcaaggacaccgtccttcctaaagcaca---tgttttagcgagtgctctttttagtaaaagtgttaaagatatgga 52411383  T
Q  116 agtgaagtttg 126  Q
    ||| |||||||    
T  52411384 agttaagtttg 52411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Complemental strand, 53786389 - 53786326
Alignment:
Q  55 ctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagt 118  Q
    ||||||||  ||||||||||||| ||||||||||||||||||||||||||||||| ||| ||||    
T  53786389 ctcctaaaacacaacatgttttggcgagtgctctttttagtaaaagtgttcaagacatggaagt 53786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 43123874 - 43123780
Alignment:
Q  18 tttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatat 112  Q
    |||||| |||||||||||||||| |||||  || |||||||||||||||||||||| |||  |||||   |||||| ||||||||||||| ||||    
T  43123874 tttgactttaacaattttactagtaaagatgccgtccctcctaaagtacaacatgtattggtgagtgtcttttttaataaaagtgttcaacatat 43123780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 29862510 - 29862413
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgc---tctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||| ||| |||| | |||||||||||| ||||||||||||| | | |||   | |||||||||||||||||||||||||| |||| |||||||    
T  29862510 ttttactaacaaggacatcgtccctcctaaagcacaacatgttttggccaatgctgttttttttagtaaaagtgttcaagatatggaagttaagtttg 29862413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 45676210 - 45676264
Alignment:
Q  59 taaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatg 113  Q
    ||||| ||||| | ||||||||||| || ||||||||||||||||||||||||||    
T  45676210 taaaggacaaccttttttgacgagtactatttttagtaaaagtgttcaagatatg 45676264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Original strand, 7501640 - 7501677
Alignment:
Q  88 tttttagtaaaagtgttcaagatatgaaagtgaagttt 125  Q
    ||||||||||||||||| ||||||||||||| ||||||    
T  7501640 tttttagtaaaagtgtttaagatatgaaagttaagttt 7501677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 126
Target Start/End: Complemental strand, 19277891 - 19277784
Alignment:
Q  19 ttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagt 118  Q
    |||| |||| || ||||||||||||||||| | |||||||||||| |||||||||||||  |||||||||||||||||||||||| || |||||| ||||    
T  19277891 ttgatgttagcatttttactagcaaagacatcgtccctcctaaagcacaacatgttttggtgagtgctctttttagtaaaagtgtccaggatatggaagt 19277792  T
Q  119 gaagtttg 126  Q
     |||||||    
T  19277791 caagtttg 19277784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 4175903 - 4175807
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatg 113  Q
    ||||||||||||||||||||||| |||| |||||| |||||  ||||| |||||||| |||| |||||| ||||||| ||||||||||||||||||||    
T  4175903 attttgacgttaacaattttacttgcaaggacaccgtccctgttaaagcacaacatgctttggcgagtg-tcttttttgtaaaagtgttcaagatatg 4175807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 5827963 - 5827869
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||| |||| |||||| |||||||||||| ||||||||||||| ||||||||||| ||| ||||| || |||||||||  |||| |||||||    
T  5827963 ttttacttgcaaggacaccgtccctcctaaagcacaacatgttttggcgagtgctcttcttaataaaattggtcaagatatagaagttaagtttg 5827869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 47679810 - 47679736
Alignment:
Q  52 tccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||||||| || ||||||||||  |||| ||||||||||||||| ||||||||||||| |||| |||||||    
T  47679810 tccctcctaaagcaccacatgttttggagagtactctttttagtaaaattgttcaagatatggaagttaagtttg 47679736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 32585809 - 32585762
Alignment:
Q  79 cgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||||||||||||||||| |||| || |||||||||| |||||||    
T  32585809 cgagtgctctttttagtaaaattgtttaatatatgaaagttaagtttg 32585762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 28040510 - 28040593
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaa 99  Q
    ||||||| |||| || |||||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  28040510 attttgatgttagcagttttactagcaatgacaccatccctcctaaagcacaacatgtttttgcgagtgctctttttagtaaaa 28040593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 126
Target Start/End: Complemental strand, 19036135 - 19036042
Alignment:
Q  32 ttttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    ||||||||| |||||| || |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||| |||||| |||| |||||||    
T  19036135 ttttactagaaaagac-ccgtccctcataaagcacaacatgttttggcgagtgctctttttagtaaaagtgttcaggatatggaagttaagtttg 19036042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 972375 - 972268
Alignment:
Q  16 attttgacgttaacaattttactagcaaagacaccatccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaa 115  Q
    |||||||||||| |||||||||| ||||  ||| | ||| | |||||  ||||||||||||| |||||| || ||||||| |||||||||||||||||||    
T  972375 attttgacgttagcaattttacttgcaagcacatcgtcctttctaaac-acaacatgttttggcgagtg-tccttttagtgaaagtgttcaagatatgaa 972278  T
Q  116 agtgaagttt 125  Q
    ||| ||||||    
T  972277 agttaagttt 972268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 126
Target Start/End: Complemental strand, 38732268 - 38732198
Alignment:
Q  56 tcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||| |||||| |||||||||| ||  | ||||||||||||||||||||||||| |||| |||||||    
T  38732268 tcctaaagcacaacaagttttgacgattgtccattttagtaaaagtgttcaagatatggaagttaagtttg 38732198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 106
Target Start/End: Complemental strand, 15585548 - 15585495
Alignment:
Q  53 ccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttca 106  Q
    |||||||||||  | |||||||||||||||||| ||||||||||||||||||||    
T  15585548 ccctcctaaagctcgacatgttttgacgagtgccctttttagtaaaagtgttca 15585495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 126
Target Start/End: Original strand, 36154681 - 36154755
Alignment:
Q  52 tccctcctaaagtacaacatgttttgacgagtgctctttttagtaaaagtgttcaagatatgaaagtgaagtttg 126  Q
    |||||||||||  ||||||||||||| ||||| | |||||||||||||||||| | ||| || || |||||||||    
T  36154681 tccctcctaaaacacaacatgttttggcgagttccctttttagtaaaagtgtttaggatgtggaaatgaagtttg 36154755  T

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