View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_27 (Length: 246)
Name: NF3604_low_27
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 185417 - 185656
Alignment:
| Q |
1 |
atatgctaatcactctgtctccaagcttcttgttgggaataaatgtgatctcaccgacaacaagcttgttcatacccacactgccaaggcatttgcggat |
100 |
Q |
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| T |
185417 |
atatgctaatcactctgtctccaagcttcttgttgggaataaatgtgatctcaccgacaacaagcttgttcatacccacactgccaaggcatttgcggat |
185516 |
T |
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| Q |
101 |
gagcttggtatccctttccttgagacaagtgctaaagactccatcaatgtcgagcaggctttcttaactatggcagctgagattaagaacaagtaactac |
200 |
Q |
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| T |
185517 |
gagcttggtatccctttccttgagacaagtgctaaagactccatcaatgtcgagcaggctttcttaactatggcagctgagattaagaacaagtaactac |
185616 |
T |
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| Q |
201 |
cttccttcccctggctattctccatttatgtttctttcat |
240 |
Q |
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| T |
185617 |
cttccttcccatggctattctccatttatgtttctttcat |
185656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 60 - 199
Target Start/End: Complemental strand, 4439401 - 4439262
Alignment:
| Q |
60 |
acaagcttgttcatacccacactgccaaggcatttgcggatgagcttggtatccctttccttgagacaagtgctaaagactccatcaatgtcgagcaggc |
159 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4439401 |
acaagcttgttcaaacccacactgccaaggcatttgcggatgagcttggtatccctttccttgagacaagtgctaaagactccatcaatgtggagcaggc |
4439302 |
T |
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| Q |
160 |
tttcttaactatggcagctgagattaagaacaagtaacta |
199 |
Q |
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| T |
4439301 |
tttcttaactatggcagccgagattaagaacaagtaacta |
4439262 |
T |
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