View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_31 (Length: 236)
Name: NF3604_low_31
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25253002 - 25253222
Alignment:
| Q |
1 |
tttcaatcagctctttaaacatttcttcccttgcatttcaggtatttctaactcagcgagagaggaagatagccttggaactgaaagtgctcctattagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25253002 |
tttcaatcagctctttaaacatttcttcccttgcatttcaggtatttctaactcagcgagagaggaagatagccttggagctgaaagtgctcctattagt |
25253101 |
T |
|
| Q |
101 |
atggccactaaaatttttggtagaaatttcatagagcgaatgtgggatataattctgtctgttggagcactcatcctccttttgtatttatttatgcatg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25253102 |
atggccactaaaatttatggtagaaatttcatagagcgaatgtggg-tataattctgtctgttggagcactcatcctccttttgtatttatttatgcatg |
25253200 |
T |
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| Q |
201 |
aaggtattattgtgtcatcttt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
25253201 |
aaggtattattgtgtcatcttt |
25253222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 48140363 - 48140583
Alignment:
| Q |
1 |
tttcaatcagctctttaaacatttcttcccttgcatttcaggtatttctaactcagcgagagaggaagatagccttggaactgaaagtgctcctattagt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
48140363 |
tttcaatcagctctttaaacatttcttcccttgcatttcaggtatttctaactcagcgagagaggaagatagccttggagctgaaagtgctcctattagt |
48140462 |
T |
|
| Q |
101 |
atggccactaaaatttttggtagaaatttcatagagcgaatgtgggatataattctgtctgttggagcactcatcctccttttgtatttatttatgcatg |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48140463 |
atggccactaaaatttatggtagaaatttcatagagcgaatgtggg-tataattctgtctgttggagcactcatcctccttttgtatttatttatgcatg |
48140561 |
T |
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| Q |
201 |
aaggtattattgtgtcatcttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
48140562 |
aaggtattattgtgtcatcttt |
48140583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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