View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3604_low_33 (Length: 227)

Name: NF3604_low_33
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3604_low_33
NF3604_low_33
[»] chr3 (3 HSPs)
chr3 (6-227)||(48756975-48757196)
chr3 (39-153)||(43377008-43377126)
chr3 (177-227)||(43377216-43377266)
[»] scaffold0010 (2 HSPs)
scaffold0010 (38-158)||(153131-153252)
scaffold0010 (157-227)||(152961-153033)
[»] chr7 (5 HSPs)
chr7 (58-151)||(43975061-43975154)
chr7 (58-124)||(33493956-33494022)
chr7 (171-226)||(10227519-10227574)
chr7 (159-221)||(43974927-43974988)
chr7 (70-131)||(10227078-10227139)
[»] chr1 (7 HSPs)
chr1 (59-131)||(10511127-10511199)
chr1 (57-158)||(8436497-8436599)
chr1 (157-227)||(10510965-10511037)
chr1 (157-227)||(13430795-13430867)
chr1 (167-227)||(8436363-8436423)
chr1 (171-213)||(25001228-25001270)
chr1 (70-123)||(25001063-25001116)
[»] chr4 (1 HSPs)
chr4 (41-157)||(29567453-29567570)
[»] chr8 (2 HSPs)
chr8 (70-131)||(42653944-42654005)
chr8 (59-111)||(37505770-37505822)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 48756975 - 48757196
Alignment:
Q  6 aggaagagcatgtgggagagtgcaatgagttgttaagagcatcaacagcgttggttctacatattgttcttaaaacacaagaacacaaaattttgttcta 105  Q
    |||||||||||| |||||||||||||||| | ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||||    
T  48756975 aggaagagcatgcgggagagtgcaatgagctcttaagagcatcaagagcgttggttctacatattgtcattaaaacacaagaacacaaagttttgttcta 48757074  T
Q  106 ggcattgtaggagaatgacctggaagatagattggagaaccattctcgcagggaaaagaaaatactatgtgaagttcatggtggaccgcatataaaacaa 205  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48757075 ggcattgtaggagaatgacctggaagacaggttggagaaccattctcgcagggaaaagaaaatactatgtgaagttcatggtggaccgcatataaaacaa 48757174  T
Q  206 attaagaacttaaatgaattgt 227  Q
    ||||||||||||||||||||||    
T  48757175 attaagaacttaaatgaattgt 48757196  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 43377008 - 43377126
Alignment:
Q  39 taagagcatcaacagcgttggttctacatattgttcttaaaacacaagaacacaaaattttg---ttctaggcattgtaggagaatgacctggaa-gata 134  Q
    |||||||||||||| |  | ||||||  |||||||||||||||||| ||||| | |||||||   |||||||||||| ||||||||||| ||||| || |    
T  43377008 taagagcatcaacaacagttgttctatctattgttcttaaaacacatgaacatagaattttgttcttctaggcattggaggagaatgacatggaaggaca 43377107  T
Q  135 gattggagaaccattctcg 153  Q
    | |||||||||| ||||||    
T  43377108 ggttggagaaccgttctcg 43377126  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 177 - 227
Target Start/End: Original strand, 43377216 - 43377266
Alignment:
Q  177 aagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgt 227  Q
    |||||||||||||||| ||||||||| |||||||||||||| ||| |||||    
T  43377216 aagttcatggtggaccccatataaaataaattaagaacttagatgcattgt 43377266  T

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Target: scaffold0010 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 153252 - 153131
Alignment:
Q  38 ttaagagcatcaacagcgttggttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaag-ataga 136  Q
    |||||||||||| || || | ||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||| |||||| | ||     
T  153252 ttaagagcatcagcaacgcttgttctacctattgttcttaaaacacaagaacatagaattttgttctaggcattggaggagaatgacatggaagtacagg 153153  T
Q  137 ttggagaaccattctcgcaggg 158  Q
    |||||||||| |||||| ||||    
T  153152 ttggagaaccgttctcgtaggg 153131  T

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Target: scaffold0010; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 153033 - 152961
Alignment:
Q  157 ggaaaagaaaatac--tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgt 227  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  153033 ggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgt 152961  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 43975154 - 43975061
Alignment:
Q  58 ggttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaagatagattggagaaccattct 151  Q
    ||||||||| | |||||||| |||||||||| |||||||||||||||||| |||| |||| |||||||||||||| || |||||||||| ||||    
T  43975154 ggttctacacactgttcttataacacaagaatacaaaattttgttctaggtattggaggaaaatgacctggaagacaggttggagaaccgttct 43975061  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 33494022 - 33493956
Alignment:
Q  58 ggttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgac 124  Q
    |||||||| |||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||    
T  33494022 ggttctacgtattgttcttaaaacacaagaacatagaattttgttctaggtattggaggagaatgac 33493956  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 10227519 - 10227574
Alignment:
Q  171 tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattg 226  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  10227519 tatgtgaagttcatggtggaccccatataaaacaaactaagaacttaaatgcattg 10227574  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 221
Target Start/End: Complemental strand, 43974988 - 43974927
Alignment:
Q  159 aaaagaaaatactatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatg 221  Q
    ||||||||||| |||||||||||||||||||||  | ||||||||||||||||||||||||||    
T  43974988 aaaagaaaata-tatgtgaagttcatggtggacgccgtataaaacaaattaagaacttaaatg 43974927  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 10227078 - 10227139
Alignment:
Q  70 tgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaag 131  Q
    ||||||||| ||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  10227078 tgttcttaagacataagaacataaaattttgttctaggcattggaggagaatgacatggaag 10227139  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 10511199 - 10511127
Alignment:
Q  59 gttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaag 131  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  10511199 gttctacctattgttcttaaaatacaagaacataaaattttgttctaggcattggaggagaatgacatggaag 10511127  T

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Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 8436599 - 8436497
Alignment:
Q  57 tggttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaa-gatagattggagaaccattctcgca 155  Q
    ||||||||| |||||||||||||| ||||||||| | ||||||||||||||||||  ||||||||||| ||||| || || |||||||||  ||||||||    
T  8436599 tggttctacgtattgttcttaaaatacaagaacatagaattttgttctaggcattagaggagaatgacatggaaggacaggttggagaactgttctcgca 8436500  T
Q  156 ggg 158  Q
    |||    
T  8436499 ggg 8436497  T

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Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 10511037 - 10510965
Alignment:
Q  157 ggaaaagaaaatac--tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgt 227  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  10511037 ggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgt 10510965  T

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Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 13430795 - 13430867
Alignment:
Q  157 ggaaaagaaaatac--tatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgt 227  Q
    |||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  13430795 ggaaaagaaaatataatatgtgaagttcatggtggaccccatataaaacaaattaagaacttaaatgcattgt 13430867  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 167 - 227
Target Start/End: Complemental strand, 8436423 - 8436363
Alignment:
Q  167 atactatgtgaagttcatggtggaccgcatataaaacaaattaagaacttaaatgaattgt 227  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||||    
T  8436423 atactatgtgaagtttatggtagaccccatataaaacaaattaagaacttaaatgcattgt 8436363  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 25001228 - 25001270
Alignment:
Q  171 tatgtgaagttcatggtggaccgcatataaaacaaattaagaa 213  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  25001228 tatgtgaagttcatggtggacctcatataaaacaaactaagaa 25001270  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 25001063 - 25001116
Alignment:
Q  70 tgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatga 123  Q
    ||||||||| ||||||||||| | |||||||||||||| |||| ||||||||||    
T  25001063 tgttcttaagacacaagaacagagaattttgttctaggtattggaggagaatga 25001116  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 29567453 - 29567570
Alignment:
Q  41 agagcatcaacagcgttggttctacatattgttcttaaaacacaagaacacaaaattttgttctag-gcattgtaggagaatgacctggaagatagattg 139  Q
    |||||||||||| || | ||||| |||||| |||||||||||||| |||| | |||||||||||||  ||||| |||| |||| | ||| ||| || |||    
T  29567453 agagcatcaacaacgctagttcttcatattcttcttaaaacacaataacatagaattttgttctagaccattggaggataatgtcttggcagacaggttg 29567552  T
Q  140 gagaaccattctcgcagg 157  Q
    ||||||| ||||| ||||    
T  29567553 gagaaccgttctcccagg 29567570  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 131
Target Start/End: Original strand, 42653944 - 42654005
Alignment:
Q  70 tgttcttaaaacacaagaacacaaaattttgttctaggcattgtaggagaatgacctggaag 131  Q
    |||| |||| ||| ||||||| | ||||||||||||||||||| ||||||||||| ||||||    
T  42653944 tgtttttaagacataagaacaaagaattttgttctaggcattggaggagaatgacatggaag 42654005  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 111
Target Start/End: Complemental strand, 37505822 - 37505770
Alignment:
Q  59 gttctacatattgttcttaaaacacaagaacacaaaattttgttctaggcatt 111  Q
    |||||||| | |||||||| || ||||||||||| |||||||||||| |||||    
T  37505822 gttctacacactgttcttacaatacaagaacacataattttgttctatgcatt 37505770  T

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