View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_34 (Length: 226)
Name: NF3604_low_34
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_34 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 6822134 - 6821915
Alignment:
| Q |
7 |
cgtagctttgctgatcaagaactattaggagagaaaacaagtgtcacacaaaacaactatggaactgttgcaaaagtctacattgtatgccaacaagaca |
106 |
Q |
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| T |
6822134 |
cgtagctttgctgatcaagaactattaggagagaaaacaagtgtcacacaaaacaactatggaactgttgcaaaagtctacattgtatgccaacaagaca |
6822035 |
T |
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| Q |
107 |
aagtgttagagcatgattttcagctatcaatgattgaacgaaaccctactaatgatgtcaaagtgattgttgatgctgatcacatggccatgttctccaa |
206 |
Q |
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| T |
6822034 |
aagtgttagagcatgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattgttgatgctgatcacatggccatgttctccaa |
6821935 |
T |
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| Q |
207 |
accaaaagagctttttgcat |
226 |
Q |
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|||||||||||||||||||| |
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| T |
6821934 |
accaaaagagctttttgcat |
6821915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 6800095 - 6799887
Alignment:
| Q |
18 |
tgatcaagaactattaggagagaaaacaagtgtcacacaaaacaactatggaactgttgcaaaagtctacattgtatgccaacaagacaaagtgttagag |
117 |
Q |
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| T |
6800095 |
tgatgaagaactattacaagagaaaacaagagtcacaaaagataactatggaactgttgccaaagtcttcattgtgtgccaacaagacaaagtattagag |
6799996 |
T |
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| Q |
118 |
catgattttcagctatcaatgattgaacgaaaccctactaatgatgtcaaagtgattgttgatgctgatcacatggccatgttctccaaaccaaaagagc |
217 |
Q |
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| T |
6799995 |
catgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattgttgatgctgaccacatgcctatgttctctaaaccaaaagagc |
6799896 |
T |
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| Q |
218 |
tttttgcat |
226 |
Q |
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| T |
6799895 |
tttgtgcat |
6799887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 6811190 - 6810982
Alignment:
| Q |
18 |
tgatcaagaactattaggagagaaaacaagtgtcacacaaaacaactatggaactgttgcaaaagtctacattgtatgccaacaagacaaagtgttagag |
117 |
Q |
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| T |
6811190 |
tgatgaagaactattacaagagaaaacaaaagtcacaaaagataaccatggaactgttgccaaagtcttcattgtgtgccaacaagacaaagtgttagag |
6811091 |
T |
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| Q |
118 |
catgattttcagctatcaatgattgaacgaaaccctactaatgatgtcaaagtgattgttgatgctgatcacatggccatgttctccaaaccaaaagagc |
217 |
Q |
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| T |
6811090 |
catgattttcagctatcaatgattgaacgaaaccctgctaatgatgtcaaagtgattgttgatgctgaccacatgcctatgttctctaaaccgaaagagc |
6810991 |
T |
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| Q |
218 |
tttttgcat |
226 |
Q |
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||| ||||| |
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| T |
6810990 |
tttgtgcat |
6810982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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