View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_7 (Length: 445)
Name: NF3604_low_7
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 53714926 - 53714508
Alignment:
| Q |
10 |
aagaatataatgtggagactccaaaaccgaatnnnnnnngacgatgttgtctaattacaaccagaaaataacattatatgcaaatttttacaacacataa |
109 |
Q |
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| T |
53714926 |
aagaatataatatggagactccaaaaccgaataaaaaaagatgatgttgtctaattacaatcagaaaataacattatatgcaaatttttacaacacataa |
53714827 |
T |
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| Q |
110 |
accaacaacatttttcaaagcaaatgaaacccaccgatatcatattttacttttgaatctcatctctctcttcctatctaataatcagtcatcaaacata |
209 |
Q |
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|| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||| |||||||||||||||| |
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| T |
53714826 |
acaaacaacatttttcaaagcaaatgaaacttaccgatatcatattttacttttgactctcatctctctcttcctatttgata-tcagtcatcaaacata |
53714728 |
T |
|
| Q |
210 |
gtcgatacctaccataatcggctcatctgactacccaagttagaccgctagcatctcaccttaactacatcaagatcagcgcctccacctgatgctttac |
309 |
Q |
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| T |
53714727 |
gtcgatacctaccataatcggctcatctgactacccaagttagaccgctagcatttcaccttaactgcatcaagatcagcgcctccacctgatgctttac |
53714628 |
T |
|
| Q |
310 |
gccggcacttctttcaggcagtgttacttttagatatgtatgcatttaatttttatacactgtttgtgtaaaaactttacaatattggtctaacacaaac |
409 |
Q |
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| T |
53714627 |
gcccgcacttctttcaggcagcgttacttttagatatgtatgaatttaatttttatacactgtttgtgtaaaaaatttacaatattggtctaacacaaac |
53714528 |
T |
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| Q |
410 |
aattatgtatgagactttat |
429 |
Q |
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| T |
53714527 |
aattatgtatgatactttat |
53714508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 31997161 - 31997115
Alignment:
| Q |
67 |
caaccagaaaataacattatatgcaaatttttacaacacataaacca |
113 |
Q |
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| T |
31997161 |
caacgagagaataacattatatgcaaattgttacaacacatatacca |
31997115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 104
Target Start/End: Original strand, 31803808 - 31803840
Alignment:
| Q |
72 |
agaaaataacattatatgcaaatttttacaaca |
104 |
Q |
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| T |
31803808 |
agaaaataacattatatgcaaatctttacaaca |
31803840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 45123368 - 45123316
Alignment:
| Q |
56 |
ttgtctaattacaaccagaaaataacattatatgcaaatttttacaacacata |
108 |
Q |
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||||| ||| ||||| ||||||||| | |||||||||| |||||||||||||| |
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| T |
45123368 |
ttgtccaatgacaactagaaaataatactatatgcaaacttttacaacacata |
45123316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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