View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3604_low_8 (Length: 421)

Name: NF3604_low_8
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3604_low_8
NF3604_low_8
[»] chr7 (37 HSPs)
chr7 (19-143)||(45285569-45285693)
chr7 (191-415)||(45285741-45285967)
chr7 (297-408)||(19222494-19222604)
chr7 (298-355)||(40686570-40686627)
chr7 (298-415)||(40449704-40449821)
chr7 (297-355)||(21128425-21128483)
chr7 (297-355)||(22324644-22324702)
chr7 (297-409)||(35125046-35125160)
chr7 (297-354)||(1566212-1566269)
chr7 (298-414)||(45419233-45419349)
chr7 (297-415)||(18487558-18487681)
chr7 (298-372)||(21224719-21224793)
chr7 (297-355)||(18487000-18487058)
chr7 (297-355)||(32278043-32278101)
chr7 (304-355)||(27712342-27712393)
chr7 (297-414)||(48640635-48640754)
chr7 (304-372)||(9141620-9141691)
chr7 (34-98)||(24178856-24178920)
chr7 (19-100)||(11592232-11592314)
chr7 (19-100)||(33351463-33351545)
chr7 (298-348)||(34837906-34837956)
chr7 (18-100)||(32629153-32629236)
chr7 (314-372)||(16492193-16492253)
chr7 (191-221)||(6250119-6250149)
chr7 (191-221)||(9141739-9141769)
chr7 (191-221)||(16671531-16671561)
chr7 (191-221)||(17645899-17645929)
chr7 (191-221)||(18486916-18486946)
chr7 (191-221)||(18487446-18487476)
chr7 (191-221)||(22324563-22324593)
chr7 (98-143)||(21224133-21224178)
chr7 (383-415)||(2354378-2354410)
chr7 (99-143)||(4455363-4455407)
chr7 (383-415)||(18487089-18487121)
chr7 (99-143)||(34837183-34837227)
chr7 (99-143)||(34988945-34988989)
chr7 (99-143)||(40450166-40450210)
[»] chr2 (20 HSPs)
chr2 (298-415)||(10129130-10129248)
chr2 (297-409)||(20641432-20641544)
chr2 (297-409)||(41995373-41995485)
chr2 (297-355)||(20709215-20709273)
chr2 (300-415)||(41326780-41326897)
chr2 (298-409)||(37131114-37131225)
chr2 (298-414)||(14336168-14336288)
chr2 (26-100)||(11503170-11503244)
chr2 (297-415)||(17370293-17370413)
chr2 (298-372)||(11657854-11657929)
chr2 (27-79)||(8179343-8179395)
chr2 (297-341)||(11736279-11736323)
chr2 (26-85)||(37280659-37280718)
chr2 (191-221)||(11657745-11657775)
chr2 (191-221)||(14336510-14336540)
chr2 (191-221)||(37131279-37131309)
chr2 (191-221)||(41995544-41995574)
chr2 (98-143)||(28611874-28611919)
chr2 (98-143)||(29550128-29550173)
chr2 (191-219)||(14336343-14336371)
[»] chr6 (24 HSPs)
chr6 (297-415)||(23622616-23622734)
chr6 (298-415)||(1393833-1393950)
chr6 (297-415)||(4099901-4100020)
chr6 (297-415)||(17906410-17906530)
chr6 (297-414)||(34294255-34294373)
chr6 (298-409)||(29201803-29201915)
chr6 (297-410)||(17203191-17203311)
chr6 (27-100)||(6080999-6081072)
chr6 (297-372)||(809228-809305)
chr6 (297-355)||(26832190-26832248)
chr6 (297-414)||(32208242-32208359)
chr6 (19-100)||(20429295-20429377)
chr6 (18-100)||(9705342-9705425)
chr6 (191-221)||(809122-809152)
chr6 (191-221)||(17011343-17011373)
chr6 (191-221)||(17906590-17906620)
chr6 (191-221)||(23622509-23622539)
chr6 (97-143)||(24223590-24223636)
chr6 (98-143)||(29201553-29201598)
chr6 (99-143)||(4100384-4100428)
chr6 (99-143)||(4125715-4125759)
chr6 (99-143)||(17200320-17200364)
chr6 (193-221)||(17203110-17203138)
chr6 (191-219)||(26832312-26832340)
[»] chr5 (22 HSPs)
chr5 (297-415)||(16305726-16305845)
chr5 (297-414)||(12441966-12442082)
chr5 (297-415)||(14165783-14165903)
chr5 (297-355)||(19122630-19122688)
chr5 (300-414)||(23140871-23140990)
chr5 (297-348)||(24326472-24326523)
chr5 (297-348)||(24350819-24350870)
chr5 (297-348)||(24351372-24351423)
chr5 (297-355)||(9487708-9487766)
chr5 (297-350)||(19322445-19322498)
chr5 (19-100)||(2077130-2077212)
chr5 (19-100)||(20317533-20317615)
chr5 (27-79)||(1289207-1289259)
chr5 (304-355)||(38110201-38110252)
chr5 (28-82)||(26512-26566)
chr5 (191-221)||(9487847-9487877)
chr5 (191-261)||(19122523-19122594)
chr5 (191-221)||(19322338-19322368)
chr5 (98-143)||(24351537-24351582)
chr5 (98-143)||(31487149-31487194)
chr5 (382-414)||(7127940-7127972)
chr5 (191-219)||(16305644-16305672)
[»] chr4 (33 HSPs)
chr4 (297-409)||(18001903-18002015)
chr4 (297-415)||(4942007-4942128)
chr4 (297-370)||(8118919-8118993)
chr4 (298-372)||(2177440-2177516)
chr4 (297-409)||(52689057-52689171)
chr4 (297-414)||(53144437-53144555)
chr4 (297-414)||(22293295-22293411)
chr4 (298-352)||(29967533-29967587)
chr4 (297-355)||(54653319-54653377)
chr4 (297-409)||(7809914-7810028)
chr4 (297-414)||(7821913-7822035)
chr4 (26-100)||(48624185-48624259)
chr4 (312-355)||(28813542-28813585)
chr4 (298-414)||(24049998-24050115)
chr4 (298-348)||(41851830-41851880)
chr4 (19-100)||(23907960-23908042)
chr4 (98-143)||(15456287-15456332)
chr4 (98-143)||(15463671-15463716)
chr4 (98-143)||(44500667-44500712)
chr4 (95-143)||(8397808-8397856)
chr4 (33-101)||(27451820-27451888)
chr4 (320-355)||(8397316-8397351)
chr4 (29-100)||(56224316-56224387)
chr4 (191-221)||(8397418-8397448)
chr4 (191-221)||(12899838-12899868)
chr4 (19-100)||(16001599-16001681)
chr4 (191-221)||(22293188-22293218)
chr4 (191-221)||(41851937-41851967)
chr4 (191-221)||(53144637-53144667)
chr4 (98-143)||(7796780-7796825)
chr4 (99-143)||(7526510-7526554)
chr4 (191-219)||(24049848-24049876)
chr4 (382-410)||(54653260-54653288)
[»] chr1 (30 HSPs)
chr1 (297-414)||(44264144-44264263)
chr1 (298-369)||(4100262-4100334)
chr1 (297-372)||(45417242-45417316)
chr1 (297-415)||(1647892-1648011)
chr1 (297-355)||(3226888-3226946)
chr1 (298-408)||(47791037-47791150)
chr1 (297-412)||(12115696-12115817)
chr1 (18-100)||(32406109-32406192)
chr1 (304-408)||(25931684-25931788)
chr1 (297-372)||(21618312-21618387)
chr1 (297-345)||(38684421-38684469)
chr1 (300-355)||(18912746-18912800)
chr1 (33-100)||(49349059-49349126)
chr1 (297-414)||(51272083-51272201)
chr1 (31-100)||(27342938-27343007)
chr1 (191-221)||(1647811-1647841)
chr1 (191-221)||(3227003-3227033)
chr1 (191-221)||(38684319-38684349)
chr1 (314-372)||(43762120-43762178)
chr1 (191-221)||(45417392-45417422)
chr1 (191-221)||(51272279-51272309)
chr1 (98-143)||(5428523-5428568)
chr1 (192-221)||(18912638-18912667)
chr1 (382-415)||(18912831-18912864)
chr1 (98-143)||(30083973-30084018)
chr1 (98-143)||(42492231-42492276)
chr1 (191-219)||(44262948-44262976)
chr1 (191-219)||(44263608-44263636)
chr1 (99-143)||(47790692-47790736)
chr1 (191-219)||(47790929-47790957)
[»] scaffold0001 (1 HSPs)
scaffold0001 (300-372)||(196552-196624)
[»] chr3 (20 HSPs)
chr3 (298-372)||(38887208-38887283)
chr3 (297-355)||(18095320-18095378)
chr3 (308-415)||(20876835-20876943)
chr3 (297-372)||(2730550-2730626)
chr3 (297-414)||(11522929-11523051)
chr3 (26-100)||(9257651-9257725)
chr3 (303-355)||(10266999-10267051)
chr3 (33-100)||(3368320-3368387)
chr3 (19-79)||(52137732-52137793)
chr3 (19-86)||(36809984-36810052)
chr3 (19-100)||(51449362-51449444)
chr3 (106-143)||(17755739-17755776)
chr3 (106-143)||(19057059-19057096)
chr3 (191-221)||(18094906-18094936)
chr3 (191-221)||(51654314-51654344)
chr3 (98-143)||(38887431-38887476)
chr3 (106-143)||(38887646-38887683)
chr3 (99-143)||(3847821-3847865)
chr3 (99-143)||(38887861-38887905)
chr3 (382-414)||(47502738-47502770)
[»] chr8 (22 HSPs)
chr8 (297-409)||(34947871-34947984)
chr8 (301-414)||(30206148-30206258)
chr8 (302-355)||(1198247-1198300)
chr8 (297-372)||(30437768-30437844)
chr8 (298-372)||(27853326-27853405)
chr8 (19-100)||(15216926-15217008)
chr8 (300-355)||(9389132-9389187)
chr8 (297-355)||(23086039-23086096)
chr8 (316-369)||(33198980-33199033)
chr8 (19-75)||(36543694-36543751)
chr8 (19-79)||(31977207-31977268)
chr8 (99-143)||(34345140-34345184)
chr8 (33-100)||(13588266-13588333)
chr8 (191-221)||(1198160-1198190)
chr8 (191-221)||(27853467-27853497)
chr8 (191-221)||(27854221-27854251)
chr8 (98-143)||(1197873-1197918)
chr8 (383-415)||(13797682-13797714)
chr8 (99-143)||(23831011-23831055)
chr8 (382-414)||(23960252-23960284)
chr8 (99-143)||(33198599-33198643)
chr8 (191-219)||(34947769-34947797)
[»] scaffold0097 (1 HSPs)
scaffold0097 (297-355)||(13052-13110)
[»] scaffold0024 (1 HSPs)
scaffold0024 (42-91)||(74712-74761)
[»] scaffold0073 (2 HSPs)
scaffold0073 (27-79)||(20935-20987)
scaffold0073 (27-79)||(27221-27273)
[»] scaffold0432 (1 HSPs)
scaffold0432 (98-143)||(5375-5420)
[»] scaffold0018 (1 HSPs)
scaffold0018 (98-142)||(163869-163913)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 7e-62; HSPs: 37)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 45285569 - 45285693
Alignment:
Q  19 accaaggaggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtatccttgtttattaatttta 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285569 accaaggaggagaaaaatctatgtataagattgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtatccttgtttattaatttta 45285668  T
Q  119 ttaggtccgcagaaatttaacctaa 143  Q
    |||||||||||||||||||||||||    
T  45285669 ttaggtccgcagaaatttaacctaa 45285693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 191 - 415
Target Start/End: Original strand, 45285741 - 45285967
Alignment:
Q  191 aaggaaatattttgtacacttatttaatactnnnnnnn-tgcattgctccaatttattcctatcttcttgccnnnnnnnnnngtt-gctatcgtcttgcc 288  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| |           || ||||||||||||||    
T  45285741 aaggaaatattttgtacacttatttaatactaaaaaaaatgcattgctccaatttattcctatcttcttggcttgtttttttttttgctatcgtcttgcc 45285840  T
Q  289 nnnnnnnngacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaa 388  Q
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||    
T  45285841 ttttttttgacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcctttttttgataatattttgtacactttttttttgaaccaa 45285940  T
Q  389 tttcatgcctttatttcattcttatca 415  Q
    |||||||||||||||||||||||||||    
T  45285941 tttcatgcctttatttcattcttatca 45285967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 408
Target Start/End: Original strand, 19222494 - 19222604
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||         |||||||||||||||    
T  19222494 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttttacaatattttgtacac-ttttttttgaaccaatttcatgc 19222592  T
Q  397 ctttatttcatt 408  Q
    ||||||||||||    
T  19222593 ctttatttcatt 19222604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 40686627 - 40686570
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40686627 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttt 40686570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 40449821 - 40449704
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgc-ctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||| | ||||||||||||||          ||||||||||||||    
T  40449821 acaatattttgtacacaatactagaaaaattcatcgcacaaatttcatgcttttttttttacaatattttgtacacttttttttt-aaccaatttcatgc 40449723  T
Q  397 ctttatttcattcttatca 415  Q
    ||||||||||||| |||||    
T  40449722 ctttatttcattcctatca 40449704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 21128425 - 21128483
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  21128425 gacaatattttgtacacaataccagaaaaattcatcgcactaatttcatgccttttttt 21128483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 22324644 - 22324702
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  22324644 gacaatattatgtacacaatactagaaaaattcatcgcactaatttcatgccttttttt 22324702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 35125046 - 35125160
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgc---ctttttttgataatattttgtacacnnnnnnnnngaaccaatttca 393  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    ||||||||| ||||||||||||||          |||||||||||    
T  35125046 gacaatattttctacacaatactagaaaaattcatcgcactaatttcatgcattttttttttgagaatattttgtacacttttttttt-aaccaatttca 35125144  T
Q  394 tgcctttatttcattc 409  Q
    ||||||||||||||||    
T  35125145 tgcctttatttcattc 35125160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 1566269 - 1566212
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttt 354  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  1566269 gacaatattttgtacacaatactagaaaaattcatcgcactaatttaatgcctttttt 1566212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 298 - 414
Target Start/End: Complemental strand, 45419349 - 45419233
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatg--cctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    ||||||| | ||||||||||||||          |||||||||||||    
T  45419349 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatggtttttttttttacaatattttgtacactttttttt--aaccaatttcatg 45419252  T
Q  396 cctttatttcattcttatc 414  Q
    |||||||||||||| ||||    
T  45419251 cctttatttcattcctatc 45419233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 18487558 - 18487681
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc----tttttttgataatattttgtacac-nnnnnnnnngaaccaattt 391  Q
    ||||||||||||||||||||||||| |||| ||||| |||||||||||||||    ||||||| | ||||||||||||||          ||||||||||    
T  18487558 gacaatattttgtacacaatactaggaaaaatcattacactaatttcatgccttttttttttttacaatattttgtacacttgtttttttgaaccaattt 18487657  T
Q  392 catgcctttatttcattcttatca 415  Q
    |||||||||||||||||| |||||    
T  18487658 catgcctttatttcattcctatca 18487681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 21224719 - 21224793
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc-tttttttgataatattttgtacac 372  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| | ||||||||||||||    
T  21224719 acaatattttgtacacaatactagaaaaa-tcatcgcactaatttcatgcctttttttttacaatattttgtacac 21224793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 18487000 - 18487058
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  18487000 gacaatattttgtacacaatactaggaaaaatcattacactaatttcatgccttttttt 18487058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 32278101 - 32278043
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  32278101 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgttttttttt 32278043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 355
Target Start/End: Complemental strand, 27712393 - 27712342
Alignment:
Q  304 ttttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  27712393 ttttgtacacaatactagaaaaattcgtcgcactaatttcatgccttttttt 27712342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 48640754 - 48640635
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt--ttttgataatattttgtacac-nnnnnnnnngaaccaatttca 393  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||  |||| | ||||||||| ||||          ||||||||||||    
T  48640754 gacaatattttgtagacaatactagaaaa-ttcatcgcactaatttcatgccttttctttttacaatattttgcacacttttttttttgaaccaatttca 48640656  T
Q  394 tgcctttatttcattcttatc 414  Q
    |||||||||||||||| ||||    
T  48640655 tgcctttatttcattcctatc 48640635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 372
Target Start/End: Complemental strand, 9141691 - 9141620
Alignment:
Q  304 ttttgtacacaatactagaaaaattcattgcactaatttcatgccttt---ttttgataatattttgtacac 372  Q
    ||||||||||| ||||||||||||||||  ||||||||||||||||||   |||||| ||||||||||||||    
T  9141691 ttttgtacacagtactagaaaaattcatcccactaatttcatgccttttttttttgacaatattttgtacac 9141620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 24178920 - 24178856
Alignment:
Q  34 aatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgt 98  Q
    ||||||| ||||||||||| |||||| |||||||||| ||||||||||||||| | |||||||||    
T  24178920 aatctatatataagcttgcgaagggacgagaaagaaaaacaagagacctggaccaagtgaagtgt 24178856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 11592232 - 11592314
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| |||||||||||||||||| || ||||||||||||||||  ||||| | || ||||||||    
T  11592232 accaaggagggagagaaatctatatataagcttgctaagggacgaaaaagaaagacaagagatttggaccaagtaaagtgtat 11592314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 33351545 - 33351463
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| ||||||||| |||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  33351545 accaaggagggagagaaatctatatataagctttctaagggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 33351463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Original strand, 34837906 - 34837956
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc 348  Q
    ||||||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  34837906 acaatattttgtacacagtactagaaaaattcatcgcagtaatttcatgcc 34837956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 32629153 - 32629236
Alignment:
Q  18 caccaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    ||||||||||| ||| ||||||||  | |||||||| |||||| ||||| |||||||||||||||| ||| | |||||||||||    
T  32629153 caccaaggagggagagaaatctatacacaagcttgcgaagggacgagaacgaaagacaagagacctagaccaagtgaagtgtat 32629236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 16492253 - 16492193
Alignment:
Q  314 aatactagaaaaattcattgcactaatttcatgcc--tttttttgataatattttgtacac 372  Q
    ||||||||||||||| || ||||||||||||||||  ||||||| | ||||||||||||||    
T  16492253 aatactagaaaaatttatcgcactaatttcatgcctgttttttttacaatattttgtacac 16492193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 6250119 - 6250149
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  6250119 aaggaaatattttgtacacttatttaatact 6250149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 9141769 - 9141739
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  9141769 aaggaaatattttgtacacttatttaatact 9141739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 16671531 - 16671561
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  16671531 aaggaaatattttgtacacttatttaatact 16671561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 17645899 - 17645929
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  17645899 aaggaaatattttgtacacttatttaatact 17645929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 18486916 - 18486946
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  18486916 aaggaaatattttgtacacttatttaatact 18486946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 18487446 - 18487476
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  18487446 aaggaaatattttgtacacttatttaatact 18487476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 22324563 - 22324593
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  22324563 aaggaaatattttgtacacttatttaatact 22324593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 21224133 - 21224178
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  21224133 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 21224178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Complemental strand, 2354410 - 2354378
Alignment:
Q  383 aaccaatttcatgcctttatttcattcttatca 415  Q
    ||||||||||||||||||||||||||| |||||    
T  2354410 aaccaatttcatgcctttatttcattcctatca 2354378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 4455363 - 4455407
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||||||||||| |||  ||||||||||||    
T  4455363 atccttatttattaattttattaggtctgcaacaatttaacctaa 4455407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 18487089 - 18487121
Alignment:
Q  383 aaccaatttcatgcctttatttcattcttatca 415  Q
    ||||||||||||||||||||||||||| |||||    
T  18487089 aaccaatttcatgcctttatttcattcctatca 18487121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 34837183 - 34837227
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  34837183 atccttatttattaattttgttaggtctgcagcaatttaacctaa 34837227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 34988989 - 34988945
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||||||||||| |||| || |||||||||    
T  34988989 atccttatttattaattttattaggtctgcagcaacttaacctaa 34988945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 40450210 - 40450166
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  40450210 atccttatttattaattttgttaggtctgcagcaatttaacctaa 40450166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 298 - 415
Target Start/End: Complemental strand, 10129248 - 10129130
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||         ||| |||||||||||    
T  10129248 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttttgacaatattttgtacactttttttttgaatcaatttcatgc 10129149  T
Q  397 ctttatttcattcttatca 415  Q
    ||||||||||||| |||||    
T  10129148 ctttatttcattcctatca 10129130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 20641544 - 20641432
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||     
T  20641544 gacaatattttgtacacaaaactcgaaaatttcatcgcactaatttcatgcctttttttgacaatattttgtacactttttttttgaaccaatttcatgt 20641445  T
Q  397 ctttatttcattc 409  Q
    |||||||||||||    
T  20641444 ctttatttcattc 20641432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 41995485 - 41995373
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||         ||||||||||||||    
T  41995485 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcctttttttttacaatattttgtacac-ttttttttgaaccaatttcatg 41995387  T
Q  396 cctttatttcattc 409  Q
     |||||||||||||    
T  41995386 tctttatttcattc 41995373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 20709215 - 20709273
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  20709215 gacaatattttctacacaatactagaaaaattcattgcactaatttcatgcattttttt 20709273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 41326780 - 41326897
Alignment:
Q  300 aatattttgtacacaatactagaaaaattcattgcactaatttcatg---cctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||     ||||||||| ||||||||||||||         |||||||||||||||    
T  41326780 aatattttgaacacaatactagaaaaattcatcgcactaatttcatgttttttttttttgacaatattttgtacac-ttttctttgaaccaatttcatgc 41326878  T
Q  397 ctttatttcattcttatca 415  Q
    ||||||||||||| |||||    
T  41326879 ctttatttcattcctatca 41326897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 409
Target Start/End: Complemental strand, 37131225 - 37131114
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||||||||||| ||||||||| ||| || |||||||||||||||| |||| | ||||||||||||||         ||||||||| |||||    
T  37131225 acaatattttgtacacaatattagaaaaatccatcgcgctaatttcatgcctttttttttacaatattttgtacac-ttttttctgaaccaattccatgc 37131127  T
Q  397 ctttatttcattc 409  Q
    |||||||||||||    
T  37131126 ctttatttcattc 37131114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 414
Target Start/End: Complemental strand, 14336288 - 14336168
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc--tttttttgataatattttgtacac--nnnnnnnnngaaccaatttca 393  Q
    ||||||||||||||||| || ||||||||||||| |||||||||||||| |  ||||||| | ||||||||||||||           ||||||||||||    
T  14336288 acaatattttgtacacagtattagaaaaattcatcgcactaatttcatgtcatttttttttacaatattttgtacacttttttttattgaaccaatttca 14336189  T
Q  394 tgcctttatttcattcttatc 414  Q
    |||||||||||||||| ||||    
T  14336188 tgcctttatttcattcatatc 14336168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 11503244 - 11503170
Alignment:
Q  26 aggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||||||||  ||||||||||||| ||| ||||||||||||||||||| |||||  | |||||||||||    
T  11503244 aggagaaaaatctatacataagcttgctaatggatgagaaagaaagacaagagaactggatcaagtgaagtgtat 11503170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 17370293 - 17370413
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgat----aatattttgtacacnnnnnnnnngaaccaatttc 392  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||  |    ||||||||||||||          ||||||||||    
T  17370293 gacaatattttgtacacaatactagaaaaattcatcgcattaattttataccttttttttttttacaatattttgtacactttttttt--aaccaatttc 17370390  T
Q  393 atgcctttatttcattcttatca 415  Q
    ||||||||||||||||| |||||    
T  17370391 atgcctttatttcattcctatca 17370413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 11657854 - 11657929
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc-tttttttgataatattttgtacac 372  Q
    ||||||||||||||| |||||||||||||||||| |||||||| || | || ||||||| | ||||||||||||||    
T  11657854 acaatattttgtacaaaatactagaaaaattcatcgcactaatctcttacctttttttttacaatattttgtacac 11657929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Original strand, 8179343 - 8179395
Alignment:
Q  27 ggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    ||||| |||||||| |||||||||| ||||||| |||||||||||||||||||    
T  8179343 ggagagaaatctatatataagcttggtaagggacgagaaagaaagacaagaga 8179395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 11736279 - 11736323
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatt 341  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  11736279 gacaatattttgtacacaatactagaaaaattcatcccactaatt 11736323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 37280659 - 37280718
Alignment:
Q  26 aggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctgga 85  Q
    ||||||||||||||| ||||| |||| |||||||  ||||||| ||||||||||| ||||    
T  37280659 aggagaaaaatctatatataaacttgttaagggaccagaaagacagacaagagacttgga 37280718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 11657745 - 11657775
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  11657745 aaggaaatattttgtacacttatttaatact 11657775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 14336540 - 14336510
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  14336540 aaggaaatattttgtacacttatttaatact 14336510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 37131309 - 37131279
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  37131309 aaggaaatattttgtacacttatttaatact 37131279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 41995574 - 41995544
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  41995574 aaggaaatattttgtacacttatttaatact 41995544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 28611919 - 28611874
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  28611919 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 28611874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 29550128 - 29550173
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||||||||||| |||  ||||||||||||    
T  29550128 tatccttatttattaattttattaggtctgcaacaatttaacctaa 29550173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 14336371 - 14336343
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  14336371 aaggaaatattttgtacacttatttaata 14336343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 23622616 - 23622734
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||          ||||||||||||||    
T  23622616 gacaatattttgtacaaaatactagaaaaattcatcgcactaatttcatgcctttttttgagaatattttttacactttttttttaaaccaatttcatgc 23622715  T
Q  397 ctttatttcattcttatca 415  Q
    ||||||||||||| |||||    
T  23622716 ctttatttcattcctatca 23622734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 298 - 415
Target Start/End: Original strand, 1393833 - 1393950
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgcc 397  Q
    ||||||||||||||||||||||||||||||| || |||||||| |||| | ||||||||| ||||||||||||||          |||||||||||||||    
T  1393833 acaatattttgtacacaatactagaaaaattaatcgcactaatgtcatacatttttttgacaatattttgtacactttttttttaaaccaatttcatgcc 1393932  T
Q  398 tttatttcattcttatca 415  Q
    |||||||||||| |||||    
T  1393933 tttatttcattcctatca 1393950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 4100020 - 4099901
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttt-tttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | |||| |||||||||         |||||||||| ||     
T  4100020 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttattttacaatactttgtacacttttttttcgaaccaattttata 4099921  T
Q  396 cctttatttcattcttatca 415  Q
    |||||||||||||| |||||    
T  4099920 cctttatttcattcctatca 4099901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 17906530 - 17906410
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt---ttttgataatattttgtacacnnnnnnnnngaaccaatttca 393  Q
    ||||||||||||||||||||||||||||||||||| ||  |||||||||||||||   |||||| ||||||||||||||          |||||||||||    
T  17906530 gacaatattttgtacacaatactagaaaaattcatcgccataatttcatgccttttttttttgacaatattttgtacacttttttttt-aaccaatttca 17906432  T
Q  394 tgcctttatttcattcttatca 415  Q
    |||||||||||||||| |||||    
T  17906431 tgcctttatttcattcctatca 17906410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 34294255 - 34294373
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgc-ctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||| |  ||||||| | ||||||||||||||         ||||||||||||||    
T  34294255 gacaatattttgtacacaatactagaaaaatttatcggactaatttcatacttttttttttacaatattttgtacactttttttttgaaccaatttcatg 34294354  T
Q  396 cctttatttcattcttatc 414  Q
    |||||||||||||| ||||    
T  34294355 cctttatttcattcctatc 34294373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 298 - 409
Target Start/End: Original strand, 29201803 - 29201915
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc-tttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||| ||||||| | ||||||||||||||          |||||||||||||     
T  29201803 acaatattttgtacataatactagaaaaattcatcgcactaattttatgcctttttttttacaatattttgtacacttttttttttaaccaatttcatgt 29201902  T
Q  397 ctttatttcattc 409  Q
    |||||||||||||    
T  29201903 ctttatttcattc 29201915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 410
Target Start/End: Original strand, 17203191 - 17203311
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcct----ttttttgataatattttgtacacnnnnnnnnn---gaaccaat 389  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||    |||||| | ||||||||||||||            ||||||||    
T  17203191 gacaatattttgtacacaataccagaaaaattcatcgcactaatttcatgcctcttttttttttacaatattttgtacacttttttttttttgaaccaat 17203290  T
Q  390 ttcatgcctttatttcattct 410  Q
    |||||||||||||||||||||    
T  17203291 ttcatgcctttatttcattct 17203311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 6080999 - 6081072
Alignment:
Q  27 ggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    ||||| |||||||| |||||||||||||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  6080999 ggagagaaatctatatataagcttgctaagggacgagaaagaaagacaagagagttggaccaagtaaagtgtat 6081072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 809228 - 809305
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcct--ttttttgataatattttgtacac 372  Q
    ||||||||| | |||||||| |||||||||||||| ||||||||||||| |||  |||||||| |||||||| |||||    
T  809228 gacaatattctctacacaatgctagaaaaattcatcgcactaatttcataccttattttttgacaatattttatacac 809305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 26832248 - 26832190
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||| | ||||||||||||| ||||||||||||||  |||||||    
T  26832248 gacaatattttgtacacaacattagaaaaattcatcgcactaatttcatgttttttttt 26832190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 32208359 - 32208242
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||| |||||||| ||||||||||||| | | ||||||||  | ||||||| | ||||||| ||||||          ||||||||||||||    
T  32208359 gacaatattttggacacaatattagaaaaattcatggtattaatttcagcctttttttttacaatatttggtacacctttttttttaaccaatttcatgc 32208260  T
Q  397 ctttatttcattcttatc 414  Q
    ||||||||||||| ||||    
T  32208259 ctttatttcattcctatc 32208242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 20429377 - 20429295
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| || |||||||  |||||| ||||| |||||||||||||||| ||| | |||||||||||    
T  20429377 accaaggagggagagaaatctatatacaagcttgtgaagggacgagaacgaaagacaagagacctagaccaagtgaagtgtat 20429295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 9705342 - 9705425
Alignment:
Q  18 caccaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    ||||||||||| ||| |||||||| || |||||||  |||||| ||||  |||||||||||||||| ||| | |||||||||||    
T  9705342 caccaaggagggagagaaatctatatacaagcttgggaagggacgagagcgaaagacaagagacctagaccaagtgaagtgtat 9705425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 809122 - 809152
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  809122 aaggaaatattttgtacacttatttaatact 809152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 17011343 - 17011373
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  17011343 aaggaaatattttgtacacttatttaatact 17011373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 17906620 - 17906590
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  17906620 aaggaaatattttgtacacttatttaatact 17906590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 23622509 - 23622539
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  23622509 aaggaaatattttgtacacttatttaatact 23622539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 24223636 - 24223590
Alignment:
Q  97 gtatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||| |||||||||||||||||||| |||| || |||||||||    
T  24223636 gtatccttatttattaattttattaggtctgcagcaacttaacctaa 24223590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 29201553 - 29201598
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  29201553 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 29201598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 4100428 - 4100384
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  4100428 atccttatttattaattttgttaggtctgcagcaatttaacctaa 4100384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 4125759 - 4125715
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  4125759 atccttatttattaattttgttaggtctgcagcaatttaacctaa 4125715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 17200320 - 17200364
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||||||||||| |||| || |||||||||    
T  17200320 atccttatttattaattttattaggtctgcagcaacttaacctaa 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 221
Target Start/End: Original strand, 17203110 - 17203138
Alignment:
Q  193 ggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||    
T  17203110 ggaaatattttgtacacttatttaatact 17203138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Complemental strand, 26832340 - 26832312
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  26832340 aaggaaatattttgtacacttatttaata 26832312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 16305726 - 16305845
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgc-ctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||         |||||||||||||     
T  16305726 gacaatattttatacacaatactagaaaaattcattgcactaatttcatgctttttttttgacaatattttgtacactttttttttgaaccaatttcata 16305825  T
Q  396 cctttatttcattcttatca 415  Q
    |||||||||||||| |||||    
T  16305826 cctttatttcattcctatca 16305845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 12442082 - 12441966
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||| | ||||||||||||||          |||||||||||||    
T  12442082 gacaatattttgtacacaatactaaaaaaattcatcgcactaatttcatgcctttttttttacaatattttgtacactttttttt--aaccaatttcatg 12441985  T
Q  396 cctttatttcattcttatc 414  Q
    |||||||||||||| ||||    
T  12441984 cctttatttcattcctatc 12441966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 415
Target Start/End: Complemental strand, 14165903 - 14165783
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt--ttttgataatattttgtacacnnnnnnnnngaaccaatttcat 394  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||||||||||  |||| | ||||||||||||||          ||||||||||||    
T  14165903 gacagtattttgtacacaatactagaaaaattcattgcattaatttcatgccttttttttttacaatattttgtacacttttttttttaaccaatttcat 14165804  T
Q  395 gcctttatttcattcttatca 415  Q
    | ||||||||||||| |||||    
T  14165803 gtctttatttcattcctatca 14165783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 19122630 - 19122688
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  19122630 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttt 19122688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 23140871 - 23140990
Alignment:
Q  300 aatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt----gataatattttgtacacnnnnnnnnn-gaaccaatttcat 394  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    || |||||||| |||||          |||||||||||||    
T  23140871 aatattttgtacacaatactagaaaaattcatcgcactaatttcatgcctttttttttttgacaatattttctacacttttttatttgaaccaatttcat 23140970  T
Q  395 gcctttatttcattcttatc 414  Q
    ||||||||||||||| ||||    
T  23140971 gcctttatttcattcctatc 23140990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 348
Target Start/End: Original strand, 24326472 - 24326523
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24326472 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcc 24326523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 24350870 - 24350819
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24350870 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcc 24350819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 348
Target Start/End: Complemental strand, 24351423 - 24351372
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc 348  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  24351423 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcc 24351372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 9487766 - 9487708
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||    
T  9487766 gacaatattttgtacacaatactataaaatttcattgcactaatttcgtgccttttttt 9487708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 19322445 - 19322498
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctt 350  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  19322445 gacaatattttgtacacaatactaaaaaaattcatcgcactaatttcatgcctt 19322498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 2077212 - 2077130
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  2077212 accaaggagggagagaaatctatatataagcttgctaagggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 2077130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 20317533 - 20317615
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  20317533 accaaggagggagagaaatctatatataagcttgctaagggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 20317615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 1289259 - 1289207
Alignment:
Q  27 ggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    ||||| |||||||| |||||||||||||||||| ||||||||||| |||||||    
T  1289259 ggagagaaatctatatataagcttgctaagggacgagaaagaaagtcaagaga 1289207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 355
Target Start/End: Original strand, 38110201 - 38110252
Alignment:
Q  304 ttttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||| |||||||||||||||||  ||||||||||||| ||||||||    
T  38110201 ttttgtacacgatactagaaaaattcatcccactaatttcatgtcttttttt 38110252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Original strand, 26512 - 26566
Alignment:
Q  28 gagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacct 82  Q
    |||||| |||||| |||||| ||||||| ||| ||||||||||||||||||||||    
T  26512 gagaaatatctatatataagattgctaatggacgagaaagaaagacaagagacct 26566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 9487877 - 9487847
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  9487877 aaggaaatattttgtacacttatttaatact 9487847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 261
Target Start/End: Original strand, 19122523 - 19122594
Alignment:
Q  191 aaggaaatattttgtacacttatttaatactnnnnnnntgcattgctccaattt-attcctatcttcttgcc 261  Q
    |||||||||| ||||||||||||||||||||       ||||| |||||||||| |||||||| ||||||||    
T  19122523 aaggaaatatattgtacacttatttaatactaaaaaaatgcatcgctccaatttcattcctatattcttgcc 19122594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 19322338 - 19322368
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  19322338 aaggaaatattttgtacacttatttaatact 19322368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 24351582 - 24351537
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  24351582 tatccttatttattaatttttttaggtctgcagtaatttaacctaa 24351537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 31487194 - 31487149
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  31487194 tatccttatttattaattttgttaggtctgcagtaatttaacctaa 31487149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Original strand, 7127940 - 7127972
Alignment:
Q  382 gaaccaatttcatgcctttatttcattcttatc 414  Q
    |||||||||||||||||||||||||||| ||||    
T  7127940 gaaccaatttcatgcctttatttcattcctatc 7127972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 16305644 - 16305672
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  16305644 aaggaaatattttgtacacttatttaata 16305672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 18002015 - 18001903
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||         ||||||||||||||     
T  18002015 gacaatattttgtacacaaaactcgaaaatttcatcgcactaatttcatgcctttttttgacaatattttgtacactttttttttgaaccaatttcatgt 18001916  T
Q  397 ctttatttcattc 409  Q
    |||||||||||||    
T  18001915 ctttatttcattc 18001903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 4942007 - 4942128
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt--gataatattttgtacac-nnnnnnnnngaaccaatttca 393  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  || ||||| ||||||||          ||||||||||||    
T  4942007 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttttcgacaatatcttgtacacttttttttttgaaccaatttca 4942106  T
Q  394 tgcctttatttcattcttatca 415  Q
    |||||||||||||||| |||||    
T  4942107 tgcctttatttcattcctatca 4942128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 370
Target Start/End: Original strand, 8118919 - 8118993
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgc-ctttttttgataatattttgtac 370  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||| ||||||||||||||    
T  8118919 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgctttttttttaataatattttgtac 8118993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 298 - 372
Target Start/End: Original strand, 2177440 - 2177516
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcct--ttttttgataatattttgtacac 372  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||  |||||||| ||||||||||||||    
T  2177440 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatggcttcttttttgacaatattttgtacac 2177516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 52689171 - 52689057
Alignment:
Q  297 gacaatattttgtacacaa-tactagaaaaattcattgcactaatttcatg-cctttttttgataatattttgtacacnnnnnnnnngaaccaatttcat 394  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||||   ||||||||| ||||||||||||||         |||||||||||||    
T  52689171 gacaacattttgtacacaaatactagaaaaattcatcgcactaatttcatgttttttttttgacaatattttgtacactttttttttgaaccaatttcat 52689072  T
Q  395 gcctttatttcattc 409  Q
    |||||||||||||||    
T  52689071 gcctttatttcattc 52689057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 53144555 - 53144437
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatg-cctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| | ||||||| | ||||||||||||||          || ||||||||||    
T  53144555 gacaatattttgtatacaatactagaaaaattcatcgcactaatttcatgtctttttttttacaatattttgtacacttttttttttaatcaatttcatg 53144456  T
Q  396 cctttatttcattcttatc 414  Q
    |||||||||||||| ||||    
T  53144455 cctttatttcattcctatc 53144437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 22293295 - 22293411
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgc 396  Q
    |||||||||||||||| ||||||||||||||| ||  ||||||||||||||  |||||| | ||||||||||||||          ||||||||||||||    
T  22293295 gacaatattttgtacataatactagaaaaatttatcacactaatttcatgctatttttttacaatattttgtacacttttttttt-aaccaatttcatgc 22293393  T
Q  397 ctttatttcattcttatc 414  Q
    ||||||||||||||||||    
T  22293394 ctttatttcattcttatc 22293411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 352
Target Start/End: Original strand, 29967533 - 29967587
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttt 352  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  29967533 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcctttt 29967587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 54653377 - 54653319
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  54653377 gacaatattttgtacacaatactagaaaaattcatcgcacaaatttcatgccttttttt 54653319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 7809914 - 7810028
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc---tttttttgataatattttgtacacnnnnnnnnngaaccaatttca 393  Q
    |||||||||||||||| |||||||||||||||||| |||||||| |||||||   ||||||||| ||||||||||||||         ||||||||||||    
T  7809914 gacaatattttgtacaaaatactagaaaaattcatcgcactaatctcatgccttttttttttgacaatattttgtacac-ttttttttgaaccaatttca 7810012  T
Q  394 tgcctttatttcattc 409  Q
    ||| ||||||||||||    
T  7810013 tgcatttatttcattc 7810028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 7821913 - 7822035
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc------tttttttgataatattttgtacacnnnnnnnnngaaccaatt 390  Q
    |||||||||||||||| |||||||||||||||||| |||||||| |||||||      ||||||||| ||||||||||||||         |||||||||    
T  7821913 gacaatattttgtacaaaatactagaaaaattcatcgcactaatctcatgcccttttttttttttgacaatattttgtacac-ttttttttgaaccaatt 7822011  T
Q  391 tcatgcctttatttcattcttatc 414  Q
    |||||| |||||||||||| ||||    
T  7822012 tcatgcatttatttcattcctatc 7822035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 26 - 100
Target Start/End: Complemental strand, 48624259 - 48624185
Alignment:
Q  26 aggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||| |||||||| |||||||||||||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  48624259 aggagagaaatctatatataagcttgctaagggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 48624185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 312 - 355
Target Start/End: Original strand, 28813542 - 28813585
Alignment:
Q  312 acaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  28813542 acaatactagaaaaattcatcgcactaatttcatgccttttttt 28813585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 414
Target Start/End: Original strand, 24049998 - 24050115
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc---tttttttgataatattttgtacacnnnnnnnnngaaccaatttcat 394  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||| ||||   ||||||| | ||||||||||||||          ||||||||||||    
T  24049998 acaatattttgtaaacaatattagaaaaattcatcacactaatttcttgcctttttttttttacaatattttgtacactttttttt--aaccaatttcat 24050095  T
Q  395 gcctttatttcattcttatc 414  Q
    ||||||||||||||| ||||    
T  24050096 gcctttatttcattcctatc 24050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 298 - 348
Target Start/End: Complemental strand, 41851880 - 41851830
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc 348  Q
    |||||||||||||||||||||||||||||||| | ||| ||||||||||||    
T  41851880 acaatattttgtacacaatactagaaaaattcgtcgcattaatttcatgcc 41851830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 23908042 - 23907960
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| |||||||||||||  ||| |||||||||||||||||||  ||||| | || ||||||||    
T  23908042 accaaggagggagacaaatctatatataagcttgctattggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 23907960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 15456287 - 15456332
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  15456287 tatccttgtttattaattttgttaggtctgcagcaatttaacctaa 15456332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 15463671 - 15463716
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  15463671 tatccttgtttattaattttgttaggtctgcagcaatttaacctaa 15463716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 44500667 - 44500712
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||||||||||||| ||||||| |||| ||||||||||||    
T  44500667 tatccttgtttattaattttgttaggtctgcagcaatttaacctaa 44500712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 8397856 - 8397808
Alignment:
Q  95 gtgtatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  8397856 gtgtatccttatttattaattttgttaggtctgcagcaatttaacctaa 8397808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 27451888 - 27451820
Alignment:
Q  33 aaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtatc 101  Q
    |||||||| || |||||||  |||||| ||||| ||||| |||||||||||||| | ||||||||||||    
T  27451888 aaatctatatacaagcttgtgaagggacgagaacgaaagccaagagacctggaccaagtgaagtgtatc 27451820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 320 - 355
Target Start/End: Complemental strand, 8397351 - 8397316
Alignment:
Q  320 agaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||| |||||||||||||||||||||||    
T  8397351 agaaaaattcatcgcactaatttcatgccttttttt 8397316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 56224316 - 56224387
Alignment:
Q  29 agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||| ||| |||||||||||||| ||| |||||| ||||| |||| |||| ||  |||||||||||||    
T  56224316 agaaaaatttatatataagcttgctaatggacgagaaaaaaagataagacacctagatcaggtgaagtgtat 56224387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 8397448 - 8397418
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  8397448 aaggaaatattttgtacacttatttaatact 8397418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 12899838 - 12899868
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  12899838 aaggaaatattttgtacacttatttaatact 12899868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 16001681 - 16001599
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| ||||  |||| ||||| | |||||||||||| ||||||| ||||||| ||||| |||||    
T  16001681 accaaggagggagagaaatctatatatattcttgttaaggaacgagaaagaaagataagagacgtggactaagtgaaatgtat 16001599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 22293188 - 22293218
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  22293188 aaggaaatattttgtacacttatttaatact 22293218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 41851967 - 41851937
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  41851967 aaggaaatattttgtacacttatttaatact 41851937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 53144667 - 53144637
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  53144667 aaggaaatattttgtacacttatttaatact 53144637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 7796780 - 7796825
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  7796780 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 7796825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 7526554 - 7526510
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||||| |||||||||||||| |||| || |||||||||    
T  7526554 atccttgtttatcaattttattaggtctgcagcaacttaacctaa 7526510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 24049848 - 24049876
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  24049848 aaggaaatattttgtacacttatttaata 24049876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 410
Target Start/End: Complemental strand, 54653288 - 54653260
Alignment:
Q  382 gaaccaatttcatgcctttatttcattct 410  Q
    |||||||||||||||||||||||||||||    
T  54653288 gaaccaatttcatgcctttatttcattct 54653260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 44264144 - 44264263
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc--tttttttgataatattttgtacacnnnnnnnnngaaccaatttcat 394  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||| | |||||||||| |||          ||||||||||||    
T  44264144 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttttttacaatattttgttcacttttttttttaaccaatttcat 44264243  T
Q  395 gcctttatttcattcttatc 414  Q
    ||||||||||||||| ||||    
T  44264244 gcctttatttcattcctatc 44264263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 298 - 369
Target Start/End: Complemental strand, 4100334 - 4100262
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgta 369  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  4100334 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttttgacaatattttgta 4100262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 45417316 - 45417242
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacac 372  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||    
T  45417316 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatg-ctttttttcacaatattttgtacac 45417242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 415
Target Start/End: Original strand, 1647892 - 1648011
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacac-nnnnnnnnngaaccaatttcatg 395  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||    |||||||||||||           |||||||||||||    
T  1647892 gacaatattttgtacacaatactagaaaaattcatcgccctaatttcatgcctttttttttacatattttgtacactttttttttttaaccaatttcatg 1647991  T
Q  396 cctttatttcattcttatca 415  Q
    |||||||||||||| |||||    
T  1647992 cctttatttcattcctatca 1648011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 3226946 - 3226888
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  3226946 gacaatattttgtacacaatactagaaaaattcatcgcactaattacatgccttttttt 3226888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 408
Target Start/End: Original strand, 47791037 - 47791150
Alignment:
Q  298 acaatattttgtacacaatactagaaaaa-ttcattgcactaatttcatgcc-tttttttgataatattttgtacac-nnnnnnnnngaaccaatttcat 394  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||||||||||||||          |||||||||||||    
T  47791037 acaatattttgtacacaatactagaaaaatttcatcgcactaatttcatgcctttttttttacaatattttgtacacttttttttttgaaccaatttcat 47791136  T
Q  395 gcctttatttcatt 408  Q
    ||||||||||||||    
T  47791137 gcctttatttcatt 47791150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 297 - 412
Target Start/End: Original strand, 12115696 - 12115817
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt------gataatattttgtacacnnnnnnnnngaaccaatt 390  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||      || |||||| ||||||          |||||||||    
T  12115696 gacaatattttgtacacaataatagaaaaattcatcgcactaatttcatgtctttttttttttccgacaatattatgtacatttttttttggaaccaatt 12115795  T
Q  391 tcatgcctttatttcattctta 412  Q
    ||||||||||||||||||||||    
T  12115796 tcatgcctttatttcattctta 12115817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 32406192 - 32406109
Alignment:
Q  18 caccaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||||||||| ||||||||| ||||  | |||||||||||    
T  32406192 caccaaggagggagaaaaatctatatataagcttgctaagggatgagaaagaaaaacaagagacttggatcaagtgaagtgtat 32406109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 408
Target Start/End: Complemental strand, 25931788 - 25931684
Alignment:
Q  304 ttttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgcctttatt 403  Q
    ||||||||||||||||||||||||| || ||||||||||||| | ||||||| | ||||||||||||||          ||||||||||||| |||||||    
T  25931788 ttttgtacacaatactagaaaaatttatcgcactaatttcatcctttttttttacaatattttgtacacttttttttttaaccaatttcatgtctttatt 25931689  T
Q  404 tcatt 408  Q
    |||||    
T  25931688 tcatt 25931684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 21618312 - 21618387
Alignment:
Q  297 gacaatattttgtacacaa-tactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacac 372  Q
    ||||| ||||||||||||| |||||||||||||||| ||||||||||||||  ||||||||| ||||||||||||||    
T  21618312 gacaacattttgtacacaaatactagaaaaattcatcgcactaatttcatg-ttttttttgacaatattttgtacac 21618387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 38684421 - 38684469
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcat 345  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||    
T  38684421 gacaatattttgtatacaatactagaaaaattcatcgcactaatttcat 38684469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 18912746 - 18912800
Alignment:
Q  300 aatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||    
T  18912746 aatattttgtacaaaatattagaaaaattca-tgcactaatttcatgccttttttt 18912800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 49349126 - 49349059
Alignment:
Q  33 aaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||  ||||| | || ||||||||    
T  49349126 aaatctatatataagcttgctaagggacgagaaagaaagacaagagatttggaccaagtaaagtgtat 49349059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 414
Target Start/End: Complemental strand, 51272201 - 51272083
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatg--cctttttttgataatattttgtacacnnnnnnnnngaaccaatttcat 394  Q
    |||||||||||| ||||||||||| |||||||| | ||||||||||||||    ||||||||| ||||||||| ||||          ||||||||||||    
T  51272201 gacaatattttgcacacaatactaaaaaaattcgtcgcactaatttcatgtttttttttttgacaatattttgcacacatttttttt-aaccaatttcat 51272103  T
Q  395 gcctttatttcattcttatc 414  Q
    ||||||||||||||| ||||    
T  51272102 gcctttatttcattcctatc 51272083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 27343007 - 27342938
Alignment:
Q  31 aaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||||| |||||||||||| ||||||||||||||| |||  ||||  | |||||||||||    
T  27343007 aaaaatctatatataatcttgctaagggatgagaaagaaagacaatagatttggatcaagtgaagtgtat 27342938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 1647811 - 1647841
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  1647811 aaggaaatattttgtacacttatttaatact 1647841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 3227033 - 3227003
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  3227033 aaggaaatattttgtacacttatttaatact 3227003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 38684319 - 38684349
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  38684319 aaggaaatattttgtacacttatttaatact 38684349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 43762120 - 43762178
Alignment:
Q  314 aatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacac 372  Q
    ||||||| |||||| ||| |||| |||||||||| ||||||| | ||||||||||||||    
T  43762120 aatactaaaaaaatgcatcgcaccaatttcatgctttttttttacaatattttgtacac 43762178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 45417422 - 45417392
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  45417422 aaggaaatattttgtacacttatttaatact 45417392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 51272309 - 51272279
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  51272309 aaggaaatattttgtacacttatttaatact 51272279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 5428523 - 5428568
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  5428523 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 5428568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 18912638 - 18912667
Alignment:
Q  192 aggaaatattttgtacacttatttaatact 221  Q
    ||||||||||||||||||||||||||||||    
T  18912638 aggaaatattttgtacacttatttaatact 18912667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 382 - 415
Target Start/End: Original strand, 18912831 - 18912864
Alignment:
Q  382 gaaccaatttcatgcctttatttcattcttatca 415  Q
    |||||||||||||||||||||||||||| |||||    
T  18912831 gaaccaatttcatgcctttatttcattcctatca 18912864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 30083973 - 30084018
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| |||||||||||| ||||||| ||||    
T  30083973 tatccttatttattaattttgttaggtccgcagcaatttaatctaa 30084018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 42492276 - 42492231
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  42492276 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 42492231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 44262948 - 44262976
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  44262948 aaggaaatattttgtacacttatttaata 44262976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 44263608 - 44263636
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  44263608 aaggaaatattttgtacacttatttaata 44263636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 47790692 - 47790736
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  47790692 atccttatttattaattttgttaggtctgcagcaatttaacctaa 47790736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 47790929 - 47790957
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  47790929 aaggaaatattttgtacacttatttaata 47790957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 300 - 372
Target Start/End: Complemental strand, 196624 - 196552
Alignment:
Q  300 aatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacac 372  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||| |||||    
T  196624 aatattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttttacaatattttatacac 196552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 38887283 - 38887208
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttt-ttttgataatattttgtacac 372  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||    
T  38887283 acaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcctttttttttacaatattttgtacac 38887208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 18095320 - 18095378
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18095320 gacaatattttgtacacaatactagacaaattcattgcactaatttcatgccttttttt 18095378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 20876943 - 20876835
Alignment:
Q  308 gtacacaatactagaaaaattcattgcactaatttcatgc-ctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgcctttatttca 406  Q
    |||||||||||||||||||||||| |||||||||||||||  ||||||||| ||||||||||||||          ||||||||||||||||||||||||    
T  20876943 gtacacaatactagaaaaattcatcgcactaatttcatgcattttttttgacaatattttgtacacttttttttttaaccaatttcatgcctttatttca 20876844  T
Q  407 ttcttatca 415  Q
    ||| |||||    
T  20876843 ttcctatca 20876835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 297 - 372
Target Start/End: Original strand, 2730550 - 2730626
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt-gataatattttgtacac 372  Q
    ||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  2730550 gacaataatttgtacacaatactaaaaaaattcatcgcactaatttcatgcctttttttagacaatattttgtacac 2730626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 414
Target Start/End: Original strand, 11522929 - 11523051
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgat---aatattttgtacacnnnnnnnnn--gaaccaattt 391  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||  |   ||||||||||||||           ||||||||||    
T  11522929 gacaatattttgtacacaatactagaaaaattcatcgcactaatttcatgcatttttttttttacaatattttgtacacttttttattttgaaccaattt 11523028  T
Q  392 catgcctttatttcattcttatc 414  Q
    |||| ||||||||||||||||||    
T  11523029 catgtctttatttcattcttatc 11523051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 26 - 100
Target Start/End: Original strand, 9257651 - 9257725
Alignment:
Q  26 aggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||| |||||||| |||||||||||||||||| ||||||||| ||||||||||||| || | |||||||||||    
T  9257651 aggagataaatctatatataagcttgctaagggatgagaaagaatgacaagagacctgaacaaagtgaagtgtat 9257725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 10266999 - 10267051
Alignment:
Q  303 attttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  10266999 attttgtacagaatactagaaaaattcatcgcactaatttcatgccttttttt 10267051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 3368320 - 3368387
Alignment:
Q  33 aaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||| || |  | |||||||||||    
T  3368320 aaatctatatataagcttgctaagggacgagaaagaaagacaagagacatgaatcatgtgaagtgtat 3368387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 52137732 - 52137793
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    |||||||||| ||| |||||||| |||||||||||||||||| |||||||||| ||||||||    
T  52137732 accaaggagggagagaaatctatatataagcttgctaagggacgagaaagaaaaacaagaga 52137793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 36809984 - 36810052
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggac 86  Q
    |||||||||| ||| |||| ||| ||||| |||||||||||| |||||||||||||||||||| |||||    
T  36809984 accaaggagggagataaatttatatataaacttgctaagggacgagaaagaaagacaagagacatggac 36810052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 51449444 - 51449362
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||||| ||| |||||||| |||||||||||||||||| || |||||||||||| |||  ||||| | || ||||||||    
T  51449444 accaaggagggagagaaatctatatataagcttgctaagggacgaaaaagaaagacaaaagatttggaccaagtaaagtgtat 51449362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 17755739 - 17755776
Alignment:
Q  106 tttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  17755739 tttattaattttattaggtccgcagcaatttaacctaa 17755776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 143
Target Start/End: Original strand, 19057059 - 19057096
Alignment:
Q  106 tttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  19057059 tttattaattttattaggtccgcagcaatttaacctaa 19057096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 18094906 - 18094936
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  18094906 aaggaaatattttgtacacttatttaatact 18094936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 51654314 - 51654344
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  51654314 aaggaaatattttgtacacttatttaatact 51654344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 38887476 - 38887431
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  38887476 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 38887431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 38887683 - 38887646
Alignment:
Q  106 tttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  38887683 tttattaattttattaggtctgcagcaatttaacctaa 38887646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 3847821 - 3847865
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  3847821 atccttatttattaattttgttaggtctgcagcaatttaacctaa 3847865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 38887905 - 38887861
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||||| ||||| |||| ||||||||||||    
T  38887905 atccttatttattaattttatcaggtctgcagtaatttaacctaa 38887861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 47502770 - 47502738
Alignment:
Q  382 gaaccaatttcatgcctttatttcattcttatc 414  Q
    |||||||||||||||||||||||||||| ||||    
T  47502770 gaaccaatttcatgcctttatttcattcctatc 47502738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 34947871 - 34947984
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttt-ttgataatattttgtacacnnnnnnnnngaaccaatttcatg 395  Q
    |||||||||||| ||||||||||| |||||||||  ||||||||||||||||||||| ||||||||||||||||||          ||||||||||||||    
T  34947871 gacaatattttgaacacaatactaaaaaaattcaccgcactaatttcatgcctttttattgataatattttgtacattttttttttgaaccaatttcatg 34947970  T
Q  396 cctttatttcattc 409  Q
     |||||||||||||    
T  34947971 tctttatttcattc 34947984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 414
Target Start/End: Original strand, 30206148 - 30206258
Alignment:
Q  301 atattttgtacacaatactagaaaaattcattgcactaatttcatgcctttttttgataatattttgtacacnnnnnnnnngaaccaatttcatgccttt 400  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||| ||||||| | ||||||||||||||          ||||||||||||||||||    
T  30206148 atattttatacacaatactagaaaaattaatcgcactaatttcatgctttttttttacaatattttgtacacttttttt---aaccaatttcatgccttt 30206244  T
Q  401 atttcattcttatc 414  Q
    ||||||||| ||||    
T  30206245 atttcattcctatc 30206258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 1198247 - 1198300
Alignment:
Q  302 tattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1198247 tattttgtacacaatactagaaaaattcatcgcactaatttcatgccttttttt 1198300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 372
Target Start/End: Complemental strand, 30437844 - 30437768
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt-gataatattttgtacac 372  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| || ||||| ||||||||    
T  30437844 gacaatattttgtatacaatactagaaaaattcatcgcactaatttcatgactttttttggacaatatattgtacac 30437768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 298 - 372
Target Start/End: Complemental strand, 27853405 - 27853326
Alignment:
Q  298 acaatattttgtacacaatactagaaaaattcattgcactaatttcatgcc-----tttttttgataatattttgtacac 372  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||||     ||||||||| ||||||||||||||    
T  27853405 acaatattttgtacacaatactagaaaaattcatcgcactaacttcatgccctttttttttttgacaatattttgtacac 27853326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 15217008 - 15216926
Alignment:
Q  19 accaaggagga-gaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    ||||||||||| || ||||||||||| |||||| | |||||||||||| |||||||||||||||||||| | |||||||||||    
T  15217008 accaaggaggaagagaaatctatgtacaagcttacgaagggaagagaacgaaagacaagagacctggaccaagtgaagtgtat 15216926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 9389132 - 9389187
Alignment:
Q  300 aatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  9389132 aatattttgtacacaatactagaaaaattcatcgcactaatttcatgttttttttt 9389187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 23086039 - 23086096
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  23086039 gacaatattttgtacacaatactagaaaaattcatcgaactaa-ttcatgccttttttt 23086096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 33198980 - 33199033
Alignment:
Q  316 tactagaaaaattcattgcactaatttcatgcctttttttgataatattttgta 369  Q
    |||||||||||| ||| |||| |||||||||||||||||||| |||||||||||    
T  33198980 tactagaaaaatccatcgcaccaatttcatgcctttttttgacaatattttgta 33199033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 36543694 - 36543751
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaa 75  Q
    |||||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||    
T  36543694 accaaggagggagagaaatctatatataagcttgctaagggacgagaaagaaagacaa 36543751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 31977207 - 31977268
Alignment:
Q  19 accaaggagg-agaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    |||||||||| ||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  31977207 accaaggagggagacaaatctatatatagtcttgctaagggatgagaaagaaagacaagaga 31977268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 34345140 - 34345184
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||||||||||| |||| ||||||||||||    
T  34345140 atccttatttattaattttattaggtctgcagcaatttaacctaa 34345184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 33 - 100
Target Start/End: Original strand, 13588266 - 13588333
Alignment:
Q  33 aaatctatgtataagcttgctaagggaagagaaagaaagacaagagacctggactaggtgaagtgtat 100  Q
    |||||||| |||||| ||| ||||||| ||||||| |||||||||||| ||||  | |||||||||||    
T  13588266 aaatctatttataagattggtaagggatgagaaaggaagacaagagacgtggatcaagtgaagtgtat 13588333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Original strand, 1198160 - 1198190
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  1198160 aaggaaatattttgtacacttatttaatact 1198190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 27853497 - 27853467
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  27853497 aaggaaatattttgtacacttatttaatact 27853467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 27854251 - 27854221
Alignment:
Q  191 aaggaaatattttgtacacttatttaatact 221  Q
    |||||||||||||||||||||||||||||||    
T  27854251 aaggaaatattttgtacacttatttaatact 27854221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Original strand, 1197873 - 1197918
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||| ||||||| |||| ||||||||||||    
T  1197873 tatccttatttattaattttgttaggtctgcagcaatttaacctaa 1197918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 415
Target Start/End: Original strand, 13797682 - 13797714
Alignment:
Q  383 aaccaatttcatgcctttatttcattcttatca 415  Q
    ||||||||||||||||||||||||||| |||||    
T  13797682 aaccaatttcatgcctttatttcattcctatca 13797714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 23831055 - 23831011
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||  |||||||||||||||||    
T  23831055 atccttatttattaattttgttaggtgtgcagaaatttaacctaa 23831011  T

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Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 23960284 - 23960252
Alignment:
Q  382 gaaccaatttcatgcctttatttcattcttatc 414  Q
    |||||||||||||||||||||||||||| ||||    
T  23960284 gaaccaatttcatgcctttatttcattcgtatc 23960252  T

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Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 33198599 - 33198643
Alignment:
Q  99 atccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    |||||| |||||||||||| ||||||| |||| ||||||||||||    
T  33198599 atccttatttattaattttgttaggtcagcagtaatttaacctaa 33198643  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 219
Target Start/End: Original strand, 34947769 - 34947797
Alignment:
Q  191 aaggaaatattttgtacacttatttaata 219  Q
    |||||||||||||||||||||||||||||    
T  34947769 aaggaaatattttgtacacttatttaata 34947797  T

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Target: scaffold0097 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 13052 - 13110
Alignment:
Q  297 gacaatattttgtacacaatactagaaaaattcattgcactaatttcatgccttttttt 355  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  13052 gacaatattttctacacaatactagaaaaattcattgcactaatttcatgcattttttt 13110  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 74712 - 74761
Alignment:
Q  42 tataagcttgctaagggaagagaaagaaagacaagagacctggactaggt 91  Q
    ||||||||| |||||||| |||||||||||| |||||| |||||||||||    
T  74712 tataagctttctaagggacgagaaagaaagataagagatctggactaggt 74761  T

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Target: scaffold0073 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 20987 - 20935
Alignment:
Q  27 ggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    ||||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  20987 ggagacaaatctatatatagtcttgctaagggatgagaaagaaagacaagaga 20935  T

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Target: scaffold0073; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 27273 - 27221
Alignment:
Q  27 ggagaaaaatctatgtataagcttgctaagggaagagaaagaaagacaagaga 79  Q
    ||||| |||||||| ||||  |||||||||||| |||||||||||||||||||    
T  27273 ggagacaaatctatatatagtcttgctaagggatgagaaagaaagacaagaga 27221  T

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Target: scaffold0432 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 5420 - 5375
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaacctaa 143  Q
    ||||||| |||||||||||||||||||| |||| || |||||||||    
T  5420 tatccttatttattaattttattaggtctgcagcaacttaacctaa 5375  T

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Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 163913 - 163869
Alignment:
Q  98 tatccttgtttattaattttattaggtccgcagaaatttaaccta 142  Q
    ||||||| |||||||||||| ||||||| |||| |||||||||||    
T  163913 tatccttatttattaattttgttaggtctgcagcaatttaaccta 163869  T

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