View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3604_low_9 (Length: 420)
Name: NF3604_low_9
Description: NF3604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3604_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 139 - 402
Target Start/End: Complemental strand, 43052417 - 43052145
Alignment:
| Q |
139 |
cctaataataaatctccatggaacaagaaaatgcattttgttagcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaa |
238 |
Q |
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| T |
43052417 |
cctaataataaatctccatggaacaagaaaatgcattttgtttgcaagccattcaataagattttattatgattgacgacagagttaaacttacaaacaa |
43052318 |
T |
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| Q |
239 |
tagacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagat----- |
333 |
Q |
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| T |
43052317 |
tagacaacttttaaaatctcaaattgttattatctgcaacaactcccgattcagggttgcaatgtgaaatacagaccatataaaaatgaaaagataaaaa |
43052218 |
T |
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| Q |
334 |
--nnnnnnnnncaaagaatagtttccaattaagaaacagatgatgaaatcatc--agagtcccgtgtctacag |
402 |
Q |
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| T |
43052217 |
aaaaaaaaaaacaaagaatagtttccaattaagaaacagatgatgaaatcatcatagagtcccgtgtctacag |
43052145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 43052534 - 43052453
Alignment:
| Q |
11 |
cagagaggaatttctaaacgtggttggaggagggctactgaatactgatcattatgattaaattcccaacaactgcattaga |
92 |
Q |
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| T |
43052534 |
cagagaggaatttctaaacgtggttggaggagggctactgaatactgatcattatgattaaattcctaacatctgcattaga |
43052453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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