View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3605_high_10 (Length: 528)
Name: NF3605_high_10
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_10 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 513
Target Start/End: Complemental strand, 34501991 - 34501492
Alignment:
| Q |
14 |
gaatggcttaaacaaacgctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34501991 |
gaatggcttaaacaaacgctctttatgcatgttgccagagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcag |
34501892 |
T |
|
| Q |
114 |
acaatcaacgtccatcaatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattgga |
213 |
Q |
| |
|
||| || || ||| |||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34501891 |
acagtctacatccttcaatatatgatatcagtataattattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattgga |
34501792 |
T |
|
| Q |
214 |
aagtattggtgtatacatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34501791 |
aagtattggtgtatacatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggag |
34501692 |
T |
|
| Q |
314 |
gattgtaagtctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaaggattttggt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34501691 |
gattgtaagtctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatatcgctctcaagtcattgactcggatgaaggattttggt |
34501592 |
T |
|
| Q |
414 |
gtctcccacataaatcttgatgaatatcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34501591 |
gtctcccacataaatcttgatgaatatcagaagttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
34501492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 51 - 513
Target Start/End: Original strand, 44460730 - 44461203
Alignment:
| Q |
51 |
gagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataat |
150 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||| |
|
|
| T |
44460730 |
gagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataat |
44460829 |
T |
|
| Q |
151 |
tattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatgttt |
250 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||| |
|
|
| T |
44460830 |
tattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatgttt |
44460929 |
T |
|
| Q |
251 |
ggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgctgtaccatacgc |
339 |
Q |
| |
|
||||| ||| |||||| ||| || ||||||| | |||||||||||| ||| ||||||| ||||||||||| | ||||||||||||| | |
|
|
| T |
44460930 |
ggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacac |
44461029 |
T |
|
| Q |
340 |
tcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaaggattttggtgtctcccacataaatcttgatgaata |
439 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44461030 |
tcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttgatgaata |
44461129 |
T |
|
| Q |
440 |
tcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
513 |
Q |
| |
|
||| | ||||||||||| |||| |||||||| |||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
44461130 |
tcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatgg |
44461203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 51 - 513
Target Start/End: Original strand, 44468263 - 44468736
Alignment:
| Q |
51 |
gagccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatcaacgtccatcaatatatgttatcaatataat |
150 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||||||||||||| || || ||| |||||||||| ||||| |||||| |
|
|
| T |
44468263 |
gagccttgtgtgggtttaaagatttcgaaacagccaagcagttgatccttaaaatgattgcagacagtctacatccttcaatatatgatatcagtataat |
44468362 |
T |
|
| Q |
151 |
tattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtatacatttgtgatcctcttatgttt |
250 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||| |
|
|
| T |
44468363 |
tattactgcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtatgggtttttacatttgtaatcctcttatgttt |
44468462 |
T |
|
| Q |
251 |
ggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag-----------tctgctgtaccatacgc |
339 |
Q |
| |
|
||||| ||| |||||| ||| || ||||||| | |||||||||||| ||| ||||||| ||||||||||| | ||||||||||||| | |
|
|
| T |
44468463 |
ggtttcccacgttcaaaaggtatgctacatatcaagaagatcttggaaaaagccaaaaagcaggattgtaagttaatcattactttgctgtaccatacac |
44468562 |
T |
|
| Q |
340 |
tcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaaggattttggtgtctcccacataaatcttgatgaata |
439 |
Q |
| |
|
|||||| ||||||||||| |||| |||||||||||| |||||| ||| |||||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44468563 |
tcattgttggatattgcaagctagagaaatttgatggtgctctcgagttattgactcagatgaaggattttggtgtctcccacaccaatcttgatgaata |
44468662 |
T |
|
| Q |
440 |
tcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
513 |
Q |
| |
|
||| | ||||||||||| |||| |||||||| |||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
44468663 |
tcacaagttgatccactatcttcgcttgatggatatggattgcaaaatggcaagggagcagctagaggaaatgg |
44468736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 128 - 513
Target Start/End: Original strand, 46359606 - 46360008
Alignment:
| Q |
128 |
tcaatatatgttatcaatataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtat |
227 |
Q |
| |
|
|||||||| | ||||| |||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
46359606 |
tcaatatacgatatcagtataattattactgcctatgttaatgctggggaagtcggacaggttttggagatggtgatgctattggaaagtatgggttttt |
46359705 |
T |
|
| Q |
228 |
acatttgtgatcctcttatgtttggttttacacattcaaagggtttgttacatattaggaagatcttggacaaatgcaaaaaggaggattgtaag----- |
322 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||| || || ||||| | |||||||||||||| || ||||||| ||||||||||| |
|
|
| T |
46359706 |
acatttgtaatcctcttatgtttggtttgacacattcaaaaggcatgctacatgtcaggaagatcttggaagaagccaaaaagcaggattgtaagttaat |
46359805 |
T |
|
| Q |
323 |
------tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagt------cattgactcggatgaaggatttt |
410 |
Q |
| |
|
| ||||||||||||| ||||||| ||||||||||| |||| |||||||||||| |||||| ||| |||||||| ||||||||||||| |
|
|
| T |
46359806 |
cattactttgctgtaccatacactcattgttggatattgcaagctagagaaatttgatggtgctctcgagttatatatattgactcagatgaaggatttt |
46359905 |
T |
|
| Q |
411 |
ggtgtctcccacataaatcttgatgaatatcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaa |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||| | |||||||||| |||| |||||||| |||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
46359906 |
ggtgtctcccacaccaatcttgatgaatatcacaagttgatccacaatcttcgcttgatggatatggattgcaaaatggcaagagagcagctagaggaaa |
46360005 |
T |
|
| Q |
511 |
tgg |
513 |
Q |
| |
|
||| |
|
|
| T |
46360006 |
tgg |
46360008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 323 - 513
Target Start/End: Complemental strand, 38604386 - 38604196
Alignment:
| Q |
323 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaaggattttggtgtctcccac |
422 |
Q |
| |
|
||||||||||||| | ||||||| ||||||||||| |||||| || |||||| |||||||||| |||||||| ||||||| |||||||||||||| | |
|
|
| T |
38604386 |
tctgctgtaccattcactcattgttggatattgcaagctacataattttgataaggctctcaagttattgactcagatgaagaattttggtgtctcctgc |
38604287 |
T |
|
| Q |
423 |
ataaatcttgatgaatatcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
513 |
Q |
| |
|
| |||||||||||| ||| | ||| ||||||||||||| ||||| ||| ||||||| |||||| ||| || ||| |||||||||||| |
|
|
| T |
38604286 |
accaatcttgatgaacttcacaagttaatccactctctttgcttgaaggctatggataggaaaatgacaatagtgcagctagaggaaatgg |
38604196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 323 - 513
Target Start/End: Original strand, 41583985 - 41584175
Alignment:
| Q |
323 |
tctgctgtaccatacgctcattgctggatattgcaggctacagaaatttgatgtcgctctcaagtcattgactcggatgaaggattttggtgtctcccac |
422 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||||||||||| | |
|
|
| T |
41583985 |
tctgctgtaccatacgctcattgatggatattgcaggctacagaaatttgatgaggctctcaagttattgagctagatgaaggactttggtgtctccttc |
41584084 |
T |
|
| Q |
423 |
ataaatcttgatgaatatcagaggttgatccactctctttccttgatggccatggatataaaaatggcaagagaacagttagaggaaatgg |
513 |
Q |
| |
|
| ||||||||| |||||| | ||| ||||||||||| ||||| ||| ||| ||| |||||| ||||| | ||| |||||| ||||| |
|
|
| T |
41584085 |
actaatcttgataaatatcgtaagttcttccactctcttcacttgaaggctatgaataggaaaatgtcaagaaagcagctagaggcaatgg |
41584175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 52 - 219
Target Start/End: Complemental strand, 40180166 - 40179993
Alignment:
| Q |
52 |
agccttgtgtgggtttaaaaatttagaagcagccaagaagttgatccttaaaatgattgcagacaatc------aacgtccatcaatatatgttatcaat |
145 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||| |||||||| ||||||||||||||||| || | ||||| |||| | | ||| ||||| |
|
|
| T |
40180166 |
agccttgtgtcagtttaaagattttgatgcagccaagcagttgatctttaaaatgattgcagacggtccgctacagcgtccttcaaaagaagttttcaat |
40180067 |
T |
|
| Q |
146 |
ataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtat |
219 |
Q |
| |
|
| ||||||| |||||||| | ||| ||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
40180066 |
gtgattattaagacctatgttgatgctagggaaatcggacaagctttggagatggtgatgctattggaaagtat |
40179993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 38604576 - 38604490
Alignment:
| Q |
144 |
atataattattacagcctatgttaaagctggggaaatcggacaggttttggagatggtgatgctattggaaagtattggtgtataca |
230 |
Q |
| |
|
|||||||||||| |||| |||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
38604576 |
atataattattagtgcctgtgttaaagctagggaaaccggacgggctttggagatggtgttgctattggaaagtataggtttataca |
38604490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 461
Target Start/End: Original strand, 9160417 - 9160493
Alignment:
| Q |
382 |
tcaagtcattgactcggatgaaggattttggtgtctcccacataaatcttgatgaatatcagaggttgatccactctctt |
461 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||| || |||||| |||||||||| | |||||||||||||||| |
|
|
| T |
9160417 |
tcaagttattgactgagatgaaggattttggtttctcc---atgaatctttatgaatatcacaagttgatccactctctt |
9160493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 426 - 480
Target Start/End: Original strand, 9161523 - 9161577
Alignment:
| Q |
426 |
aatcttgatgaatatcagaggttgatccactctctttccttgatggccatggata |
480 |
Q |
| |
|
||||||||||||||||| | |||| |||||||||||| ||||| ||| ||||||| |
|
|
| T |
9161523 |
aatcttgatgaatatcacaagttggtccactctcttttcttgaaggctatggata |
9161577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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