View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_15 (Length: 462)
Name: NF3605_high_15
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 126 - 456
Target Start/End: Original strand, 41459280 - 41459610
Alignment:
| Q |
126 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaaggga |
225 |
Q |
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| T |
41459280 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaaggga |
41459379 |
T |
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| Q |
226 |
tggttcaacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttc |
325 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41459380 |
tggtccaacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttc |
41459479 |
T |
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| Q |
326 |
atgttcccgaaccatatttttgtttcgcgtttctccttttctgannnnnnnatgttattctagattcagcttagttgtcttgcttaagactaatttatct |
425 |
Q |
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| T |
41459480 |
atgttcccgaaccatatttttgtttcgcgtttctccttttctgatttttttatgttattctagattcagcttagttgtcttgcttaagactaatttatct |
41459579 |
T |
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| Q |
426 |
ttattctttgcgagccttgaatattcttcga |
456 |
Q |
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| T |
41459580 |
ttattctttgcgagccttgaatttttttcga |
41459610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 41448777 - 41448902
Alignment:
| Q |
1 |
tcttggtgctgccaaagggcttgcatttcagcacagtgaagccatagtgatacatggagattttaagacttcaaatgtcttgttggattctgtatgtaga |
100 |
Q |
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| T |
41448777 |
tcttggtgctgccaaagggcttgcgtttcagcacagtgaagccatagtgatacatggagattttaagacttcaaatgtcttgttggattctgtatgtaga |
41448876 |
T |
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| Q |
101 |
attgtagacttttagtcttttgcttt |
126 |
Q |
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| T |
41448877 |
attgtagacttttagtcttttgcttt |
41448902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 41459130 - 41459251
Alignment:
| Q |
8 |
gctgccaaagggcttgcatttcagcacagtg---aagccatagtgatacatggagattttaagacttcaaatgtcttgttggattctgtatgtagaattg |
104 |
Q |
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| T |
41459130 |
gctgccaaagggcttgcatttctgcacagtgctgaaaataaagtgatatatagagattttaagacttcaaatgtcttgttggattctgtatgtagaattg |
41459229 |
T |
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| Q |
105 |
tagacttttagtcttttgcttt |
126 |
Q |
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| T |
41459230 |
tagacttttagtcttttgcttt |
41459251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 132 - 318
Target Start/End: Original strand, 41442496 - 41442679
Alignment:
| Q |
132 |
taagagattatttggataacatgtctgatacatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttc |
231 |
Q |
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|||||||||||| ||| |||||| ||| | | ||| || ||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| | |
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| T |
41442496 |
taagagattattcggaaaacatggttgaaatacatttcttgatttgattgcaggattataatgcaaagctttctgatttcgggctggcaaaggatggtcc |
41442595 |
T |
|
| Q |
232 |
aacaggtgacaaaagtcacatcttcaccaacacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtatttt |
318 |
Q |
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| T |
41442596 |
aacaggtgacaaaagccacgtct---ccaccagggtaatgggaacctatggatatgcagctcctgaatatctagctacaggtatttt |
41442679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 41442348 - 41442457
Alignment:
| Q |
8 |
gctgccaaagggcttgcatttcagcacagtgaagccat---agtgatacatggagattttaagacttcaaatgtcttgttggattctgtatgtagaattg |
104 |
Q |
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| T |
41442348 |
gctgccaaagggcttgcatttctgcacagtgatgaaaataaagtgatatatagagattttaagacttcaaatatcttgttggattccgtatgtagacttt |
41442447 |
T |
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| Q |
105 |
tagactttta |
114 |
Q |
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||| |||||| |
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| T |
41442448 |
tagtctttta |
41442457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 41448986 - 41449032
Alignment:
| Q |
214 |
gctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
260 |
Q |
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| T |
41448986 |
gctggcaagggatggtccaacaggtgagaaaagtcacgtctccacca |
41449032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 41448931 - 41448987
Alignment:
| Q |
126 |
taaatttaagagattatttggataacatgtctgatacatattcctgtatttggttgc |
182 |
Q |
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||||| ||||||||||||| |||||||| ||||||||||| ||| |||||||||| |
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| T |
41448931 |
taaatgtaagagattatttaattaacatgtatgatacatatttctggatttggttgc |
41448987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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