View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_17 (Length: 443)
Name: NF3605_high_17
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 48593723 - 48593304
Alignment:
| Q |
1 |
gaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattcccttttattaaagttgaag |
100 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
48593723 |
gaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattcccttttactaaagttgaag |
48593628 |
T |
|
| Q |
101 |
aaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngcct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48593627 |
aaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgcct |
48593528 |
T |
|
| Q |
201 |
tgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcatac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48593527 |
tgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcatac |
48593428 |
T |
|
| Q |
301 |
caggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacctttctggtctaaactc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48593427 |
caggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacctttctggcctaaactc |
48593328 |
T |
|
| Q |
401 |
taatgggttttcccatatctttgg |
424 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
48593327 |
taatgggttttcccatatctttgg |
48593304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 48598334 - 48597915
Alignment:
| Q |
1 |
gaaataggagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactacttaatttatcacaaattcccttttattaaagttgaag |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |
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|
| T |
48598334 |
gaaatagaagagcaagggcttaagattgtgaatagagaaagacataaacaacaattgcactactt----tatcacaaattcccttttactaaagttgaag |
48598239 |
T |
|
| Q |
101 |
aaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngcct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48598238 |
aaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaatttttttgcct |
48598139 |
T |
|
| Q |
201 |
tgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcatac |
300 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48598138 |
tgatctaagatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcatac |
48598039 |
T |
|
| Q |
301 |
caggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacctttctggtctaaactc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
48598038 |
caggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaatatctttgttttctaaaaacctttctggcctaaactc |
48597939 |
T |
|
| Q |
401 |
taatgggttttcccatatctttgg |
424 |
Q |
| |
|
|||||||||||||||||||||||| |
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|
| T |
48597938 |
taatgggttttcccatatctttgg |
48597915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 121; Significance: 8e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 114 - 343
Target Start/End: Original strand, 23222890 - 23223119
Alignment:
| Q |
114 |
ttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccaggccgttcatccatatcaannnnnnngccttgatctaaaatct |
213 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||| | | |
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| T |
23222890 |
ttcaatcttgcaactggaatgcaaaaaagatcattggctctaggagcagtcaatccaggccgttcatccatatcgattgttttgccttgatctaataatt |
23222989 |
T |
|
| Q |
214 |
tacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagtgggtaattgacgtagggccaaaggcataccaggacaacctct |
313 |
Q |
| |
|
||| ||| || ||||||||||||||||||||||||||||| ||||| ||||| ||||| || |||| || | |||||||||||| || || |||||||| |
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|
| T |
23222990 |
taccttcagagtcaagcatcttccactcaaagcattgtactaaagctccaatcacagtcggcaattcgcgcatggccaaaggcatccccgggcaacctct |
23223089 |
T |
|
| Q |
314 |
ccttccagaaccaaatggcaacaactcaaa |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
23223090 |
ccttccagaaccaaatggcaacaactcaaa |
23223119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 72 - 422
Target Start/End: Original strand, 23230593 - 23230952
Alignment:
| Q |
72 |
tcacaaattcccttttattaaagttgaagaaatgtaagggggttcaatcttgcaactggaatacaaataagatcattggccctaggagcagtcaatccag |
171 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| ||||||| ||||| || ||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
23230593 |
tcacaaattcccttttacaaaagctgaagaaaagtatttgggttcattcttgaaatcggaatacaaataagatcattggctctaggagcggtcaatccag |
23230692 |
T |
|
| Q |
172 |
gccgttcatccatatcaannnnnnngccttgatctaaaatcttacattccgaatcaagcatcttccactcaaagcattgtaccaaagcaccaattacagt |
271 |
Q |
| |
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| | |||||||||||| | |||| ||||||| || |||| ||| || |||||||| ||||||||||||||||| |||||||| || | ||| || |
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|
| T |
23230693 |
gtctttcatccatatcgattgttttgcctcgatctaatattttaccttcggagtcaagcattttccactcaaagcattgcaccaaagccccgactacggt |
23230792 |
T |
|
| Q |
272 |
gggtaattgacgtagggccaaaggcataccaggacaacctctccttccagaaccaaatggcaacaactcaaactggtgccctttcatgtcaata------ |
365 |
Q |
| |
|
||| ||||| || | |||||| ||||||||||| || ||||||||||||||||||||||| | ||||||| | || ||||||||||| || ||| |
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|
| T |
23230793 |
gggcaattggcgcatggccaacggcataccagggcagcctctccttccagaaccaaatggtagcaactcatagtgatgccctttcatatctatattgttt |
23230892 |
T |
|
| Q |
366 |
---tctttgttttctaaaaacctttctggtctaaactctaatgggttttcccatatcttt |
422 |
Q |
| |
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|||||||||||||||||||||||||| |||| ||||||| ||||||||||||||| |
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|
| T |
23230893 |
ccttctttgttttctaaaaacctttctggcttaaaatctaatgcattttcccatatcttt |
23230952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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