View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_24 (Length: 393)
Name: NF3605_high_24
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_24 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 11 - 379
Target Start/End: Original strand, 23697275 - 23697641
Alignment:
| Q |
11 |
cagagaaagaact--gtttcaactccattatattcaacttccacctctaacttaaacctgtgtcagaaaatggaataaatgaacaaacatgaatccatat |
108 |
Q |
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| T |
23697275 |
cagagaaagaactttgtttcaactccattatattcaacttccacctctaacttaaacctgtgtcagaaaatggaataaatgaacaaacatgaatccatat |
23697374 |
T |
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| Q |
109 |
atctgatttatatatataggagcatttaaccaactgatgttggtgtgtgtaccttagattaatagcattggtctcatgtttttggtcacacaacagtggt |
208 |
Q |
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| T |
23697375 |
atctgatttatatg----ggagcatttaaccaactaatgttggtgtatgtaccttagattaatagcattggtctcatgtttttggtcacgcaacagtggt |
23697470 |
T |
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| Q |
209 |
aaagtatcaccctttgcagccctgttgcatttggtcaatgctttgtagtacctctcattcttggatggcttgacttgattgattttaagaacagtcacac |
308 |
Q |
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| T |
23697471 |
aaagtatcaccctttgcagccctgttgcatttggtgcatgctttgtagtaccacccattcttggatggtttgacttgattgattttaagaacaatcacac |
23697570 |
T |
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| Q |
309 |
acacagttgtctatggaaaatatataaaagcaaaaccatgtcaacttcatatcacatgcttcataagagtt |
379 |
Q |
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| T |
23697571 |
acacagttgtctatggaagatatataaaagcaaaaccatgtcaacttcatatcacatgcttcataagagtt |
23697641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 159 - 331
Target Start/End: Original strand, 22078417 - 22078589
Alignment:
| Q |
159 |
accttagattaatagcattggtctcatgtttttggtcacacaacagtggtaaagtatcaccctttgcagccctgttgcatttggtcaatgctttgtagta |
258 |
Q |
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| T |
22078417 |
accttagattgatagcattggtctcgtgtttttggtcacacaacagtggtaaagtatcaccctttgcaactctgttgcacttggtgcatgctttgtagta |
22078516 |
T |
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| Q |
259 |
cctctcattcttggatggcttgacttgattgattttaagaacagtcacacacacagttgtctatggaaaatat |
331 |
Q |
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| T |
22078517 |
ccacccattcttggatggtttcacttgattgatcttcacaacagtcacacacacagttgtctatggaatatat |
22078589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 164 - 288
Target Start/End: Original strand, 123620 - 123745
Alignment:
| Q |
164 |
agattaatagcattggtctcatgtttttggtcacacaacagtggtaaagtatcaccctttgcagccc-tgttgcatttggtcaatgctttgtagtacctc |
262 |
Q |
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| T |
123620 |
agattgatagcattggtctcatggttttcagaacagaatagcggtaaggtatcaccctttgcagcccctgttgcacttagtgcacgctttgtagtaccac |
123719 |
T |
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| Q |
263 |
tcattcttggatggcttgacttgatt |
288 |
Q |
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| T |
123720 |
ccattcttggatggtttgacttgatt |
123745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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