View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_26 (Length: 392)
Name: NF3605_high_26
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_26 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 23828381 - 23828018
Alignment:
| Q |
19 |
atgtggatccaaacacaggcttgtttcccaaccactaatgaaattagcttagttgagaaacattgataagattaaactagtaaaaatattctcaaacatg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828381 |
atgtggatccaaacacaggcttgtttcccaaccactaatgaaattagcttagttgagaaacattgataagattaaactagtaaaaatattctcaaacatg |
23828282 |
T |
|
| Q |
119 |
aagcgtaagtgtttatgctataaacgcttaatgagtaataataattgcatactgcgtaaaatagcagtttagtcaaattttgttacactaaatgttatag |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
23828281 |
aagcgtaagtgtttatgctataaacgcttaatgtgtaataataattgcatactgcggaaaatagcggtttagtcaaattttgttacactaaatgttatag |
23828182 |
T |
|
| Q |
219 |
caccactttgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacaccgcaa |
318 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23828181 |
caccactttgtactaaatagtgtatcacataataatagcgatttattcaaattcagctatgctattgcgccgctatagcatctatttgacaacagcgcaa |
23828082 |
T |
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| Q |
319 |
cagttacactattttcttcttagttataagagttaaacttaccatgaactcgttgtgacctttg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
23828081 |
cagttacactattttcttcttagttataagagttaaacttaccatgaacttgttgtgacctttg |
23828018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 23832338 - 23832261
Alignment:
| Q |
41 |
gtttcccaaccactaatgaaattagcttagttgagaaacattgataagattaaactagtaaaaatattctcaaacatg |
118 |
Q |
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||||||||||||||||| |||||||||| |||||| || |||||||||||| ||||||| |||||| |||||| |
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| T |
23832338 |
gtttcccaaccactaataaaattagctttacagagaaatataaataagattaaacatgtaaaaacattctcgaacatg |
23832261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 23824223 - 23824163
Alignment:
| Q |
250 |
ataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaa |
310 |
Q |
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|||||||| |||| |||||||||| ||| ||||| ||||| ||||||| ||||||||||| |
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| T |
23824223 |
ataatagcaatttgttcaaattcagctaagctatagcgccactatagccgctatttgacaa |
23824163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 33342776 - 33342727
Alignment:
| Q |
223 |
actttgtactaaatagtgtatcacattataatagcgatttattcaaattc |
272 |
Q |
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|||||||||| ||||||||||| ||| | ||||||||||||||||||||| |
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| T |
33342776 |
actttgtacttaatagtgtatcgcataacaatagcgatttattcaaattc |
33342727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 313
Target Start/End: Complemental strand, 507809 - 507723
Alignment:
| Q |
227 |
tgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacac |
313 |
Q |
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|||||||||| ||||||||||| | |||||| |||||| ||||| ||||||||| ||||| ||| | || |||||||||||||| |
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| T |
507809 |
tgtactaaattgtgtatcacataacaatagcagtttattataattccgctatgctatagcgccactaaatcaactatttgacaacac |
507723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 7180716 - 7180761
Alignment:
| Q |
223 |
actttgtactaaatagtgtatcacattataatagcgatttattcaa |
268 |
Q |
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||||||||||||||||||||||||| | |||||| |||||||||| |
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| T |
7180716 |
actttgtactaaatagtgtatcacagaacaatagcaatttattcaa |
7180761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 283
Target Start/End: Original strand, 25314042 - 25314103
Alignment:
| Q |
222 |
cactttgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctat |
283 |
Q |
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|||||||||| ||||||||||||||| | |||| |||||| ||||||||| ||||||||| |
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| T |
25314042 |
cactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctat |
25314103 |
T |
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