View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_32 (Length: 362)
Name: NF3605_high_32
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 355
Target Start/End: Original strand, 38996808 - 38997143
Alignment:
| Q |
20 |
ataaggagtttaaggtgccggattaaaatccgaatgaatgagtaaatattaatctaacaacttgttactaacattaatcattnnnnnnncggcatgattt |
119 |
Q |
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| T |
38996808 |
ataaggagtttaaggtgccggattaaaatccgaacgaatgagtaaatattaatctaacaacttgttactaacattaatcattaaaaaaacggcatgattt |
38996907 |
T |
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| Q |
120 |
tcacagaggctttgaatttctgtttgattttggttgctataaaattgatgacttgtttgggtcttagggtgggttatttgtgttttgataaatttaataa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38996908 |
tcacagaggctttgaatttctgtttgattttggttgttataaaattgatgacttgtttgggttttagggtgggttatttgtgttttgataaatttaataa |
38997007 |
T |
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| Q |
220 |
tttttctctaactgtggttgaaaattattctgtgttttaatttggttgttatactgttatactatgttgtgctttgcatatgtatattgttatttaggtt |
319 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38997008 |
tttttctctaactatggtttaaaattattctgtgttttaatttggttgttatactgttatactatgttgtgctttgcatatgtatattgttatttaggtt |
38997107 |
T |
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| Q |
320 |
tctgtttatgtctatctttagtttttgcctatgctt |
355 |
Q |
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| T |
38997108 |
tctgtttatgtctatctttagtttttgcctctgctt |
38997143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 94
Target Start/End: Original strand, 5805175 - 5805207
Alignment:
| Q |
62 |
taaatattaatctaacaacttgttactaacatt |
94 |
Q |
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| T |
5805175 |
taaatattaatctaacaacttattactaacatt |
5805207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 81
Target Start/End: Complemental strand, 33257239 - 33257208
Alignment:
| Q |
50 |
cgaatgaatgagtaaatattaatctaacaact |
81 |
Q |
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| T |
33257239 |
cgaatgaatgagtaaatattaatctaacaact |
33257208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 3004890 - 3004849
Alignment:
| Q |
53 |
atgaatgagtaaatattaatctaacaacttgttactaacatt |
94 |
Q |
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| T |
3004890 |
atgaatgagcaaatattaatctaacaactaattactaacatt |
3004849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 10799262 - 10799303
Alignment:
| Q |
53 |
atgaatgagtaaatattaatctaacaacttgttactaacatt |
94 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
10799262 |
atgaaggagtaaatattaatctaacaactaattactaacatt |
10799303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 101
Target Start/End: Original strand, 35753093 - 35753149
Alignment:
| Q |
45 |
aaatccgaatgaatgagtaaatattaatctaacaacttgttactaacattaatcatt |
101 |
Q |
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||||||||||||| |||||||||||||||||||| | ||| ||||||| |||||| |
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| T |
35753093 |
aaatccgaatgaagaagtaaatattaatctaacaaataattaataacatttatcatt |
35753149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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