View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_40 (Length: 317)
Name: NF3605_high_40
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_40 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 49677063 - 49677355
Alignment:
| Q |
1 |
agcattagacaatagttaaatcattgggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttcttttattgacatattttgatttt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
49677063 |
agcattagacaatagttaaatcattaggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttctttcattaacatattttgatttt |
49677162 |
T |
|
| Q |
101 |
tgaaatatgacgtagatgattttggagatactttaatcaactggtttgatagtttcaattctgatatgagtcttattttgttaagccaattgaatgccta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
49677163 |
tgaaatatgacgtagatgattttggagatactttaatcaacaggtttgatagtttcaattctg--atgagtcttattttgttaagccaattgaatgtcta |
49677260 |
T |
|
| Q |
201 |
aatgcatatcaattcaaataatgtacagtgggcaccatattttatgtgaaggtgttcacatttgcatattcaacaaaagagatttgagcattattttt |
298 |
Q |
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| T |
49677261 |
aatgcatatcaattcaaatgttgtacagtggacaccatattttatgtgaa-gtgttcacatatgc--attcaacaaaagagatttgagcattactttt |
49677355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 38303372 - 38303293
Alignment:
| Q |
1 |
agcattagacaatagttaaatcattgggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttcttt |
80 |
Q |
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|||||| ||||| || |||||||||||||||||||||||||||||| ||| |||| |||||||| ||||| ||||||| |
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| T |
38303372 |
agcattggacaacagctaaatcattgggtataattgctttcatactcatccttgtctgttgcattatgtatcatttcttt |
38303293 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 34795035 - 34794956
Alignment:
| Q |
1 |
agcattagacaatagttaaatcattgggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttcttt |
80 |
Q |
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|||||| ||||| || ||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
34795035 |
agcattggacaacagccaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtttcttt |
34794956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 16911390 - 16911473
Alignment:
| Q |
1 |
agcattagacaatagttaaatcattgggtataattgctttcatacttatcattgttcgttgcattgggtatcgtttcttttatt |
84 |
Q |
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|||||| |||||| | ||||||||||| |||| |||||| ||| | ||| ||||| ||||||||||||||| ||||||||||| |
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| T |
16911390 |
agcattggacaatggctaaatcattggatatagttgcttgaataatcatccttgtttgttgcattgggtatcatttcttttatt |
16911473 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 217
Target Start/End: Complemental strand, 30332460 - 30332411
Alignment:
| Q |
168 |
gagtcttattttgttaagccaattgaatgcctaaatgcatatcaattcaa |
217 |
Q |
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|||||||| ||||||||||||| |||||| |||||||||||||||||||| |
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| T |
30332460 |
gagtcttaatttgttaagccaactgaatgtctaaatgcatatcaattcaa |
30332411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 12140322 - 12140375
Alignment:
| Q |
164 |
atatgagtcttattttgttaagccaattgaatgcctaaatgcatatcaattcaa |
217 |
Q |
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| T |
12140322 |
atatgagtattattttgttaagtcaactaaatgcttaaatgcatatcaattcaa |
12140375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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