View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_41 (Length: 315)
Name: NF3605_high_41
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 10682559 - 10682867
Alignment:
| Q |
1 |
cagacacagaaagtaaacaatgacacactacactaacataagtttcaatttaatgaaaattttagtgtatcaattgtcgtgaataatttatgataattct |
100 |
Q |
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| T |
10682559 |
cagacacagaaagtaaacaatgacacactacactagcataagtttcaacttaatgaaaatttaagtgtatcaattgtcgtgaataatttatgataattct |
10682658 |
T |
|
| Q |
101 |
aatcctgggtccatccttataa-ggctacaaataatgaagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaa |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10682659 |
aatcctgggtccatccttataaaggctacaaataatgaagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaa |
10682758 |
T |
|
| Q |
200 |
acagatagagtaatcctaatcagaaaatcccaattaatagaaatttaagaagataaaataatcctaatcagtaattcaagac---agccggagtctcctt |
296 |
Q |
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|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10682759 |
acagatagagtaatccaaatcagaaaatcctaattaatagaaatttaagaagataaaataatcctaatcagtaattcaagacttaagccggagtctcctt |
10682858 |
T |
|
| Q |
297 |
ctttctctg |
305 |
Q |
| |
|
||||||||| |
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| T |
10682859 |
ctttctctg |
10682867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 121 - 246
Target Start/End: Complemental strand, 7513362 - 7513243
Alignment:
| Q |
121 |
aaggctacaaataatgaagatatcttgatcacactttcatatataagaattatgttatgcggaatcttatcaagttaaaacagatagagtaatcctaatc |
220 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| | ||||| ||||||||||| | | | ||||||||| ||||||||| ||||||||| |
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| T |
7513362 |
aaggctacaaataatgaagatatcttaatcaaactttcacagataaggattatgttatg------catgtaaagttaaaagagatagagtcatcctaatc |
7513269 |
T |
|
| Q |
221 |
agaaaatcccaattaatagaaattta |
246 |
Q |
| |
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| |||||| |||||||| ||||||| |
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| T |
7513268 |
ggcaaatcctaattaatataaattta |
7513243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 267
Target Start/End: Complemental strand, 34000014 - 33999957
Alignment:
| Q |
210 |
taatcctaatcagaaaatcccaattaatagaaatttaagaagataaaataatcctaat |
267 |
Q |
| |
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|||||||||||| || ||| |||||| |||| ||||| ||||||||||||||||||| |
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| T |
34000014 |
taatcctaatcaacaattcctaattaacagaagtttaaaaagataaaataatcctaat |
33999957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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