View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_43 (Length: 314)
Name: NF3605_high_43
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_43 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 314
Target Start/End: Original strand, 6396939 - 6397244
Alignment:
| Q |
9 |
acgttggagggtgatggatgtctaacatccccaacttggacaataatatactgaaaggttgtggaaacaaggacttcatttgagtatgtgcaccaaaatt |
108 |
Q |
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| T |
6396939 |
acgttggagggtgatggatgtctaacatccccaacttggacaataatatactgaaaggttgtggaaacaaggacttcatttgagtatgtgcaccaaaatt |
6397038 |
T |
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| Q |
109 |
cgtcaaagaatcataatttactacactctaactcacaatattttcaattgtgatctcaccaagttgcttctgttagctaatcacaattgcgaagatttac |
208 |
Q |
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| T |
6397039 |
cgtcaaagaatcataatttactacactctaactcccaatattttcaattgtgatctcaccaagttgcttctgtgagctaatcacaattgcgaaggtttac |
6397138 |
T |
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| Q |
209 |
tgacgccaaattaccaagaatcgaagacaactgggcaaatgttgatcattcagaaacctactatgttcaagttccaaatgctagaaacctttataacatt |
308 |
Q |
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| T |
6397139 |
tgacgccaaattaccaagaatcgaagacaactgggcaaatgttgatcattcagaaacctactatgttcaagttccaaatgctagaaacctttataacatt |
6397238 |
T |
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| Q |
309 |
tggata |
314 |
Q |
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|||||| |
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| T |
6397239 |
tggata |
6397244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 6588979 - 6588880
Alignment:
| Q |
204 |
tttactgacgccaaattaccaagaatcgaagacaactgggcaa-atgttgatcattcagaaacctactatgttcaagttccaaatgctagaaacctttat |
302 |
Q |
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| T |
6588979 |
tttacggacaccaaatcaccaagaaaggaagacaattcgacaacatgttgatcattcagaaacctattatcttcaagatccaaatgttggaaacttttat |
6588880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 28532132 - 28532228
Alignment:
| Q |
176 |
ttctgttagctaatcacaattgcgaagatttactgacgccaaattaccaagaatcgaagacaactgggcaa-atgttgatcattcagaaacctacta |
271 |
Q |
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| T |
28532132 |
ttctgttagcttatcacaattactaaggttgatggacatcaaatcaccaagaaacgaagacaactggataacatgttgatcattcagaaacttacta |
28532228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 26498382 - 26498345
Alignment:
| Q |
11 |
gttggagggtgatggatgtctaacatccccaacttgga |
48 |
Q |
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| T |
26498382 |
gttggagggtggtagatgtctaacatccccaacttgga |
26498345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 55312477 - 55312440
Alignment:
| Q |
11 |
gttggagggtgatggatgtctaacatccccaacttgga |
48 |
Q |
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| T |
55312477 |
gttggagggtggtagatgtctaacatccccaacttgga |
55312440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 13133101 - 13133064
Alignment:
| Q |
11 |
gttggagggtgatggatgtctaacatccccaacttgga |
48 |
Q |
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| T |
13133101 |
gttggagggtggtagatgtctaacatccccaacttgga |
13133064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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