View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3605_high_45 (Length: 304)

Name: NF3605_high_45
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3605_high_45
NF3605_high_45
[»] chr2 (1 HSPs)
chr2 (15-304)||(26734430-26734717)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 304
Target Start/End: Complemental strand, 26734717 - 26734430
Alignment:
Q  15 aacctgtgtatgtagtgaaacatgaaagcacctgaatgtcatgcatgatggtttatttcccaaattgaaccaaaaaacgatacaactgcaaacaaaagag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26734717 aacctgtgtatgtagtgaaacatgaaagcacctgaatgtcatgcatgatggtttatttcccaaattgaaccaaaaaacgatacaactgcaaacaaaa-ag 26734619  T
Q  115 aatccgaacatgctctaacaaagagagaaaatatttgtcccataaccataacttagttgacagggacattgtattttatatgtaggacgtgttcaaatct 214  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||||| ||||||||||||||||||||     
T  26734618 aatccgaacatgctctaacaaagagagaaaatatttgtcccatgaccataacttagttggtagaaacattgtattttacatgtaggacgtgttcaaatcc 26734519  T
Q  215 aaattctccacttattcannnnnnnnnnncaacgacaaattttatttattagcatcgacacaagacgtgacaagaactatataatacaac 304  Q
    | ||||||| ||||||||           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26734518 agattctcctcttattca-ttttttttttcaacgacaaattttatttattagcatcgacagaagacgtgacaagaactatataatacaac 26734430  T

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