View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_49 (Length: 287)
Name: NF3605_high_49
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 39637526 - 39637781
Alignment:
| Q |
15 |
agagaacatttctagcatcaccttccaccacctctactattacatcatttacctgaagaaaattcagttatcagatagtttttccacatatgacataagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39637526 |
agagaacatttctagcatcaccttccaccacctctactattacatcatttacctgaagaaaattcagttatcagatagtttttccacatatgacataagt |
39637625 |
T |
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| Q |
115 |
acttaaacatcataatgtatacgtttttccttaggctcgaaagtagaaaaataaattcacgatgatattaatacacacaagttttgttggccctaactaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39637626 |
acttaaacatcataatgtatacgtttttccttaggctcgaaagtagaaaaataaattcacgatgatattaatacacacgagttttgttggccctaactaa |
39637725 |
T |
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| Q |
215 |
tagggatatggatatggaaactcaataatttcactcgaaaaggataacaattaaca |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39637726 |
tagggatatggatatggaaactcaataatttcactcgaaaagcataacaattaaca |
39637781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 39646194 - 39646449
Alignment:
| Q |
15 |
agagaacatttctagcatcaccttccaccacctctactattacatcatttacctgaagaaaattcagttatcagatagtttttccacatatgacataagt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39646194 |
agagaacatttctagcatcaccttccaccacctctactattacatcatttacctgaagaaaattcagttatcagatagtttttccacatatgacataagt |
39646293 |
T |
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| Q |
115 |
acttaaacatcataatgtatacgtttttccttaggctcgaaagtagaaaaataaattcacgatgatattaatacacacaagttttgttggccctaactaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39646294 |
acttaaacatcataatgtatacgtttttccttaggctcgaaagtagaaaaataaattcacgatgatattaatacacacgagttttgttggccctaactaa |
39646393 |
T |
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| Q |
215 |
tagggatatggatatggaaactcaataatttcactcgaaaaggataacaattaaca |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
39646394 |
tagggatatggatatggaaactcaataatttcactcgaaaagcataacaattaaca |
39646449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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