View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3605_high_5 (Length: 649)
Name: NF3605_high_5
Description: NF3605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3605_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 552; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 18 - 641
Target Start/End: Complemental strand, 12144497 - 12143874
Alignment:
| Q |
18 |
gagtattccgatcatttagttttatcatattatttgcaaatattttgctgttgtatactattatttcgggttttgcgagtttgtctacagattcatcata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12144497 |
gagtattccgatcatttagttttatcatattatttgcagatattttgctgttgtatactattatttcgggttttgcgagtttgtctacagattcatcatt |
12144398 |
T |
|
| Q |
118 |
ttttcgtttttagcgacgttgaatttgatattgtattcgatgtactctatcaacaatatgaacgagtatcgttcnnnnnnnctttctaaaaaactaaaat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12144397 |
ttttcgtttttagcgacgttgaatttgatattgtattcgatgtactctatcaacaatatgaacgagtatcgttctttttttctttctaaaaaactaaaat |
12144298 |
T |
|
| Q |
218 |
catataataatgttgaattaccaattttactaataaaattgatcaagatatgatcctctaaagtcttgatctttgttctgaatgagcagctagcatagat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12144297 |
catataataatgttgaattaccaattttactaataaaattgatcaagatatgatcctctaaagtcttgatctttgttctgaatgagcagctagcatagat |
12144198 |
T |
|
| Q |
318 |
ccttatgtgatcctcacttacagggcacaggagcacaagagtactgtgcaagaaggtacatttctgaatctgatgacaaacatagtattaatctgcttat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12144197 |
ccttatgtgatcctcacttacagggcacaggagcacaagagtactgtgcaagaaggtacatttctgaatctgatgataaacatagtattaatctgcttat |
12144098 |
T |
|
| Q |
418 |
ttgttaannnnnnnnnctctctagttgcttgattatcatattatgaataatatcaggtgctggatccaaccctcaatggaatgagacatttcttttcact |
517 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12144097 |
ttgttaatttttatttctctctagttgcttgattattgtattatgaataatatcaggtgctggatccaaccctcaatggaatgagacatttcttttcact |
12143998 |
T |
|
| Q |
518 |
gtttctgacaatgcttatgagctcaatctaaagataatggaaaaggacaactatagtgctgatgataatcttggagaagtaatgtgagttaaattcttct |
617 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12143997 |
gtttctgacactgcttatgagctcaatctaaagataatggaaaaggacaactatagtgctgatgataatcttggagaagtaatgtgagttaaattcttct |
12143898 |
T |
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| Q |
618 |
tatacttgcaaattttcctttgat |
641 |
Q |
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|||||||||||||||||||||||| |
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| T |
12143897 |
tatacttgcaaattttcctttgat |
12143874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 458 - 641
Target Start/End: Complemental strand, 12151263 - 12151081
Alignment:
| Q |
458 |
ttatgaataatatcaggtgctggatccaaccctcaatggaatgagacatttcttttcactgtttctgacaatgcttatgagctcaatctaaagataatgg |
557 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12151263 |
ttatgaataatatcaggtgctggatctaacccacaatggaatgagacatttcttttcactgtttctgacaatgcttctgagctcaatctaaagataatgg |
12151164 |
T |
|
| Q |
558 |
aaaaggacaactatagtgctgatgataatcttggagaagtaatgtgagttaaattcttcttatacttgcaaattttcctttgat |
641 |
Q |
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| T |
12151163 |
aaaaggacaactataataatgatgataatattggagaagcaatgtgagatgaattgttttta-acttgcaaatttgtctttgat |
12151081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 299 - 384
Target Start/End: Complemental strand, 12151416 - 12151331
Alignment:
| Q |
299 |
atgagcagctagcatagatccttatgtgatcctcacttacagggcacaggagcacaagagtactgtgcaagaaggtacatttctga |
384 |
Q |
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||||||||||||||||||||||||||||||||| | |||||| | ||||||||||||||||||||| |||||||||| | |||||| |
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| T |
12151416 |
atgagcagctagcatagatccttatgtgatccttagttacagtggacaggagcacaagagtactgttcaagaaggtaaaattctga |
12151331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 38545579 - 38545506
Alignment:
| Q |
94 |
gagtttgtctacagattcatcatattttcgtttttagcgacgttgaatttgatattgtattcgatgtactctatcaa |
170 |
Q |
| |
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|||||||| ||||||||||| | ||||||||||||| || ||||||||| |||||||| ||||| ||||||||||| |
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| T |
38545579 |
gagtttgttcacagattcatctt-ttttcgtttttagtgaagttgaattt-atattgta-tcgatatactctatcaa |
38545506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 34018706 - 34018780
Alignment:
| Q |
36 |
gttttatcatattatttgcaaatattttgctgttgtatactattatttcgggttttgcgagtttgtctacagatt |
110 |
Q |
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|||||||||||||||||| | ||||| |||||||||| |||||| | |||| ||| |||||||||| |||||| |
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| T |
34018706 |
gttttatcatattatttgtaggcattttactgttgtatattattatcttgggtgttgtgagtttgtctgcagatt |
34018780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 27097353 - 27097276
Alignment:
| Q |
35 |
agttttatcatattatttgcaaatattttgctgttgtatactattatttcgggttttgcgagtttgtctacagattca |
112 |
Q |
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||||||||||||||||||| | ||||||| |||||||||||||| | |||| ||| |||||||| | |||||||| |
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| T |
27097353 |
agttttatcatattatttgtaggaattttgccgttgtatactattaacttgggtgttgtgagtttgtttgcagattca |
27097276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 25032835 - 25032785
Alignment:
| Q |
118 |
ttttcgtttttagcgacgttgaatttgatattgtattcgatgtactctatcaa |
170 |
Q |
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|||| |||||||||||| ||||||||| ||||||| ||||||||||||||||| |
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| T |
25032835 |
tttttgtttttagcgactttgaatttg-tattgta-tcgatgtactctatcaa |
25032785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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